PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941526.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 919aa    MW: 102298 Da    PI: 6.6752
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941526.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.82.5e-24127227198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_010941526.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELMARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..49************************************************..788 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     + +l+++++ 
  XP_010941526.1 218 NNQLLLGIRH 227
                     8888999886 PP
2Auxin_resp120.71.1e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_010941526.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-21126219No hitNo description
SMARTSM010195.6E-25127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943127229IPR003340B3 DNA binding domain
PfamPF023621.2E-22127228IPR003340B3 DNA binding domain
PfamPF065071.2E-34253336IPR010525Auxin response factor
PfamPF023093.7E-8778871IPR033389AUX/IAA domain
SuperFamilySSF542775.89E-7786861No hitNo description
PROSITE profilePS5174523.246786870IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MRISSSGLAN QPQEEEQRYL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
IDSHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEP YLPTELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELMAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRHANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFH LRLKRPWPTG LPSLHGGKDD DAGLNSPLMW LRDGGNPGIQ SLNFQGIGIT  420
PWMQPRLDAL IHGLQPDMYQ SMAAAALQEM RTLDPAKQVL PAVLPFQQPQ NLTSRSTPLL  480
PSQILQQVQP QSQQTFLHSI QENQVPSQTQ SHFLQHQLQQ CNSFGEQQQQ HQQMQQQQLP  540
QQQHLLMQQQ QQHQQMQQKH LPDHQQIPNI VSALSHFTSA SQSQTPMLQT ISSFSQPQNY  600
PDSNSNSVST NSTSPLHNIM RPFSPEDISR LSLPRTTPLG TSSPWSCKRI AVESVLPSGA  660
QCVVPHVEQL GATQPNPSPQ SVTLPPFPVR ECSVDQDGST DPQNNLLFGV NIDSSSLLVQ  720
NGMPSLRTVA SESDSAAMPY GACNFLSPSG TDFPLNQALT SSSCLDASRF LQSPENVDQV  780
SHPQSGTFVK VYKAGSFGRS LDITRFSSYH ELRSELGRLF GLEGQLEDPV RSGWQLVFVD  840
RENDVLLVGD DPWQEFVNTV YCIKILSPQE VQQMGRQGVD LLSSAPIKRL PSNSCDGYVS  900
RQDSRNLSSG VTSVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1602035751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941526.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2H3ZIL80.0A0A2H3ZIL8_PHODC; Auxin response factor
STRINGXP_008776642.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]