PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29385.1 Da PI: 5.8241 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.9e-19 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l+++++ +G g+W+t ar g++Rt+k+c++rw++yl XP_010941513.1 23 RGPWTVEEDLKLINYIAIHGEGRWNTLARGAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.4e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_010941513.1 76 RGNISPEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.284 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-31 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-16 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-17 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.03E-12 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 24.533 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-15 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.34E-11 | 80 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEVPGRVFGS ATQPSAEEMD LRRGPWTVEE DLKLINYIAI HGEGRWNTLA RGAGLKRTGK 60 SCRLRWLNYL RPDVRRGNIS PEEQLLILEL HSRWGNRWSK IAQYLPGRTD NEIKNYWRTR 120 VQKQAKQLNC DVDSKKFKDT MRYLWMPRLM ERIRAASGSS LQGPDPQLPA CPPASSSTDL 180 TRMQFSSPVA TDSFVGDCCF SGCIPDGELN FGDGIQEARL EMVDGWCDNE GLLDFEHGGG 240 WGQNSWGLED IWFVEQQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-26 | 20 | 125 | 4 | 108 | B-MYB |
1h8a_C | 1e-25 | 20 | 125 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941513.1 | 0.0 | transcription factor MYB78-like | ||||
Swissprot | Q2QZJ8 | 1e-85 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A2H3Y4W6 | 1e-105 | A0A2H3Y4W6_PHODC; transcription factor MYB2-like | ||||
STRING | XP_008793362.1 | 1e-106 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 5e-83 | myb domain protein 78 |
Publications ? help Back to Top | |||
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