PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941465.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 666aa    MW: 71939.8 Da    PI: 6.8512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941465.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16442488455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k+Lq
  XP_010941465.1 442 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLEEAIEYLKMLQ 488
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-20436497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-17441492No hitNo description
Gene3DG3DSA:4.10.280.109.0E-21442497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-14442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-16444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MPLSEFHRPM TKDKPEATPS RVNNCSSDLF SMPDPDFAEL LWENGQVVMQ GHSSRPKKSS  60
FPTSFSSHAS GVEEKDHRDV DVPKTSRYYA MDPMINDFSP SRPSADVGVN AQDDDMVPWI  120
NYPTEEPLPD DTLQNDYCLE FLNEFMGANL NAHSASSKPM PADRSSGLGQ HAPKALTESK  180
SSEPSRVRTS QLFQMLQHSQ SSAPSSKSGG MDKGIGDGAR TLLQSKNPAG PKPLQLNGSG  240
MLNFSHFSRP AMLAKANLHG VDRPRSNEKL SAPSNSNPVE STLMESTSCF QGAAGVRGRS  300
TSGPHKMELQ SSAKTPQEVI SAEHSQAICQ QDASRKNIPN ILTNNCSRLP DQLASSSIMA  360
SVALRRQETE KAPEAVVASS SVCSANGAGA ASNDPKQQEK RKSREGEESG YQSDDFEDVS  420
VGLKKPAPGR GTSTKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK ADKASMLEEA  480
IEYLKMLQMQ VQIMSMNSGL CMPPMLLPPG MQHMHVPAMA RFLPTGVGMG MGMGLGYGMG  540
MYDMNGSPSC SMIHVPAFHG PQFPCPSIPG PLGLHGMPGS VNHQMFGVPA HGFPLSMPRP  600
SSSGISVKAN SVPEITAPMT CAIPASDAAP ASISEDQQHQ NVETSPRSNT DNSQIQNPNQ  660
EVKEPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941465.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X1
TrEMBLA0A2H3X2B90.0A0A2H3X2B9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
STRINGXP_008777260.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-33phytochrome interacting factor 3