PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941225.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LSD

Protein Properties

Length: 143aa MW: 14815.3 Da PI: 7.5014

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941225.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.9	7.9e-14	27	51	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V XP_010941225.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51 ************************9 PP
2	zf-LSD1	46.6	5.7e-15	66	90	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ XP_010941225.1 66 CGGCHTLLMYIRGATSVQCSCCHTI 90 ***********************97 PP
3	zf-LSD1	40.1	5.9e-13	104	128	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA sV+Ca+C++V XP_010941225.1 104 CGNCQMLLMYQYGAGSVKCAVCNFV 128 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.3E-12	24	54	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.1E-11	27	51	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	3.77E-5	27	125	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	1.0E-14	63	92	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.5E-13	66	90	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.1E-10	101	131	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.9E-12	104	128	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MPVPLAPYPT APVPFTPPNG GQSQLVCSGC RNLLLYPLGA TSVCCAVCNA VTAVPPPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCQML LMYQYGAGSV 120 KCAVCNFVTS VGASPITEHK PNN

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941225.1	2e-98	protein LSD1 isoform X2
Refseq	XP_010941226.1	2e-98	protein LSD1 isoform X2
Swissprot	Q0J7V9	3e-79	LSD1_ORYSJ; Protein LSD1
TrEMBL	A0A2H3YIT7	3e-92	A0A2H3YIT7_PHODC; protein LSD1 isoform X1
STRING	XP_010269986.1	3e-89	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	3e-62	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]