PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941213.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 328aa    MW: 35070.5 Da    PI: 9.5628
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941213.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07269312243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W++ Ed+ l++a k ++++   +W++Ia+ ++ g++   c  r
   XP_010941213.1 269 GSWSAGEDLALLNALKAFPKDvsmRWEKIAAAVP-GKSKACCMKR 312
                      79********************************.**99877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.529163204IPR017877Myb-like domain
SMARTSM007170.003167219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-4168206IPR009057Homeodomain-like
SuperFamilySSF466891.33E-6169207IPR009057Homeodomain-like
CDDcd001674.28E-5170220No hitNo description
SMARTSM007173.3E-4267319IPR001005SANT/Myb domain
SuperFamilySSF466896.55E-9268316IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-5269319IPR009057Homeodomain-like
PfamPF002494.0E-6269312IPR001005SANT/Myb domain
PROSITE profilePS500906.69269312IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEFVEDEARP RFLFRGGGAA PSAAGDPDAG TLKVHKLHAA ACLSAASLLV FAAVSLSHWQ  60
TLSSFLAWAS LSLLLAPFAP PSATGGDPRV GRGPVLPDPP ATPIAPSEPD EPRKRNLGRR  120
PRSQPLPSPS GPPSSSVVSS PPISQKPEER SGDTNSNGSG SAKEVEAEKE WTDEDFELLK  180
RQISKHPVGE PRRWERIAEA FRGRHGLDSI IKTAKSLSER KPAAGDSFQQ FLKQRKPLDK  240
RVDANVGDSK DEILAENGEL GKEGGGGSGS WSAGEDLALL NALKAFPKDV SMRWEKIAAA  300
VPGKSKACCM KRVAELKRDF RSSKASET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941212.10.0transcription factor MAMYB
RefseqXP_010941213.10.0transcription factor MAMYB
TrEMBLA0A2H3YIS21e-142A0A2H3YIS2_PHODC; transcription factor MAMYB
STRINGXP_008799423.11e-143(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-46MYB_related family protein