PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010941180.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 733aa MW: 81539.4 Da PI: 4.8071

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010941180.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.5e-52	9	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrFhPtdeelv++yLk+k++g+ + evi+evd++k+ePwdLp k +++++ ew+fF+++d+kya+g+r+nrat++gyWkatgkd+ + XP_010941180.1 9 LPLGFRFHPTDEELVNHYLKRKITGRIKSDVEVIPEVDVCKCEPWDLPdKsIIRSDDLEWFFFAPKDRKYANGHRSNRATEAGYWKATGKDRVIR 103 699*********************988889***********96435566777*********************************** PP NAM 94 sk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 sk +++++g+kktLvf++grapkg +t+W+mheyr XP_010941180.1 104 SKaaaaGHNVIGMKKTLVFHRGRAPKGIRTHWIMHEYRT 142 988888888**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-59	4	163	IPR003441	NAC domain
PROSITE profile	PS51005	57.244	9	163	IPR003441	NAC domain
Pfam	PF02365	3.1E-27	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MTAIALELLP LGFRFHPTDE ELVNHYLKRK ITGRIKSDVE VIPEVDVCKC EPWDLPDKSI 60 IRSDDLEWFF FAPKDRKYAN GHRSNRATEA GYWKATGKDR VIRSKAAAAG HNVIGMKKTL 120 VFHRGRAPKG IRTHWIMHEY RTTEPEFESG VQGGYVLYRL FKKSEEKSSN AKADEMDRSC 180 FSPTPAKLSP DDTQHEEDVM EEIATPLDQE SSDSVLQEGP HSLPDSVEQQ PAGIQIWLAD 240 ETDRSTTYSV KPDDSSCNIA SDNCDAKAGM HADPLQDVSA QYRDPHYEHI DSNGFPNIGS 300 PVLPYPDYFF GNMNHGSDTG YVNNADKDPL NEFLIAVLSN QDDYSSGASN VQKDSVAETL 360 PRHSIWDSAS CRDSRTSSEI DTEATLPQEL LGVEASKSFE GSSFLLNDPL RMDSLDGYPE 420 IEPQLSALYE NAYVLPYDGT GPDVCSVDSE SLQDLFNSME EPSNLKNVAN NGDRLEGAGI 480 SFRARRPQHP SNSDNKFAHQ GTAARRIRLQ GSTPKELFFS ADSESSCNKD DHEDKEAMKK 540 ALQDLFVGTE ESLTEKNTPS NEDGLEGTGI EIRARQTQHL PRLKKLSSKQ GTAVRRIRLQ 600 AHFEVGTFSS TVGELSSSKD DHEHKESMTE SLQAGEHVDD NIANLGEISK PALPDKLEQL 660 PVHDNAPPAS ELCLESKPTL RLRTKRTDDN ANTPEDPPRG RIPRSASVVY VIWLVLSVIL 720 VLMCVGIWRC ISS

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MTAIALELLP LGFRFHPTDE ELVNHYLKRK ITGRIKSDVE VIPEVDVCKC EPWDLPDKSI  60
IRSDDLEWFF FAPKDRKYAN GHRSNRATEA GYWKATGKDR VIRSKAAAAG HNVIGMKKTL  120
VFHRGRAPKG IRTHWIMHEY RTTEPEFESG VQGGYVLYRL FKKSEEKSSN AKADEMDRSC  180
FSPTPAKLSP DDTQHEEDVM EEIATPLDQE SSDSVLQEGP HSLPDSVEQQ PAGIQIWLAD  240
ETDRSTTYSV KPDDSSCNIA SDNCDAKAGM HADPLQDVSA QYRDPHYEHI DSNGFPNIGS  300
PVLPYPDYFF GNMNHGSDTG YVNNADKDPL NEFLIAVLSN QDDYSSGASN VQKDSVAETL  360
PRHSIWDSAS CRDSRTSSEI DTEATLPQEL LGVEASKSFE GSSFLLNDPL RMDSLDGYPE  420
IEPQLSALYE NAYVLPYDGT GPDVCSVDSE SLQDLFNSME EPSNLKNVAN NGDRLEGAGI  480
SFRARRPQHP SNSDNKFAHQ GTAARRIRLQ GSTPKELFFS ADSESSCNKD DHEDKEAMKK  540
ALQDLFVGTE ESLTEKNTPS NEDGLEGTGI EIRARQTQHL PRLKKLSSKQ GTAVRRIRLQ  600
AHFEVGTFSS TVGELSSSKD DHEHKESMTE SLQAGEHVDD NIANLGEISK PALPDKLEQL  660
PVHDNAPPAS ELCLESKPTL RLRTKRTDDN ANTPEDPPRG RIPRSASVVY VIWLVLSVIL  720
VLMCVGIWRC ISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-42	9	163	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-42	9	163	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-42	9	163	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-42	9	163	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-42	9	163	20	168	NAC domain-containing protein 19
3swm_B	1e-42	9	163	20	168	NAC domain-containing protein 19
3swm_C	1e-42	9	163	20	168	NAC domain-containing protein 19
3swm_D	1e-42	9	163	20	168	NAC domain-containing protein 19
3swp_A	1e-42	9	163	20	168	NAC domain-containing protein 19
3swp_B	1e-42	9	163	20	168	NAC domain-containing protein 19
3swp_C	1e-42	9	163	20	168	NAC domain-containing protein 19
3swp_D	1e-42	9	163	20	168	NAC domain-containing protein 19
4dul_A	1e-42	9	163	17	165	NAC domain-containing protein 19
4dul_B	1e-42	9	163	17	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010941181.1	0.0	protein NTM1-like 9
TrEMBL	A0A2H4A0S1	0.0	A0A2H4A0S1_PHODC; protein NTM1-like 9
STRING	XP_008788721.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5172	38	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.2	4e-72	NAC 014