PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24154.8 Da PI: 8.9726 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.5 | 2.4e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss XP_010941169.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPKGKLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 69.4 | 1.2e-23 | 82 | 159 | 8 | 85 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +++e+++++++ e++ + k+ie L+ +R+llGe+L+s+sl+eL+ +e qLe+sl ki+++K+++l+eqi +l++k k XP_010941169.1 82 RATEQNMQQWRAEAEAMTKKIEHLEAYKRKLLGEGLGSCSLEELHGVEMQLEQSLIKIKERKYHMLMEQIARLKEKCK 159 4789**********************************************************************9965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.819 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.52E-40 | 3 | 76 | No hit | No description |
PRINTS | PR00404 | 1.1E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-32 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.3E-22 | 84 | 159 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.417 | 88 | 211 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVRGKTEVRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP KGKLYEFSSS 60 SSIQKTVDRY LMHTKDVNIN IRATEQNMQQ WRAEAEAMTK KIEHLEAYKR KLLGEGLGSC 120 SLEELHGVEM QLEQSLIKIK ERKYHMLMEQ IARLKEKCKT EPPVQLITQA SSNGDACQNM 180 EVETELIIGR PGTCEAKQQD HVSLNKQWSQ V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-16 | 1 | 78 | 1 | 73 | MEF2C |
5f28_B | 2e-16 | 1 | 78 | 1 | 73 | MEF2C |
5f28_C | 2e-16 | 1 | 78 | 1 | 73 | MEF2C |
5f28_D | 2e-16 | 1 | 78 | 1 | 73 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941169.1 | 1e-156 | MADS-box transcription factor 50 isoform X2 | ||||
Swissprot | Q9XJ60 | 9e-75 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A2H3Y891 | 1e-125 | A0A2H3Y891_PHODC; MADS-box transcription factor 50-like isoform X1 | ||||
STRING | XP_008794766.1 | 1e-125 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 6e-57 | AGAMOUS-like 20 |