PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941168.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 239aa MW: 27446.7 Da PI: 9.2061 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.2 | 2.9e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+i+fs++gklye+ss XP_010941168.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPKGKLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 75.6 | 1.3e-25 | 82 | 171 | 8 | 97 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++e+++++++ e++ + k+ie L+ +R+llGe+L+s+sl+eL+ +e qLe+sl ki+++K+++l+eqi +l++ke+ l een +Lr k XP_010941168.1 82 RATEQNMQQWRAEAEAMTKKIEHLEAYKRKLLGEGLGSCSLEELHGVEMQLEQSLIKIKERKYHMLMEQIARLKEKERILLEENLSLRGK 171 4789**********************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.819 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.51E-39 | 3 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.16E-31 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-25 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.163 | 88 | 182 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVRGKTEVRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIVFSP KGKLYEFSSS 60 SSIQKTVDRY LMHTKDVNIN IRATEQNMQQ WRAEAEAMTK KIEHLEAYKR KLLGEGLGSC 120 SLEELHGVEM QLEQSLIKIK ERKYHMLMEQ IARLKEKERI LLEENLSLRG KERILFKENS 180 SLHGKCKTEP PVQLITQASS NGDACQNMEV ETELIIGRPG TCEAKQQDHV SLNKQWSQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-16 | 1 | 78 | 1 | 73 | MEF2C |
5f28_B | 3e-16 | 1 | 78 | 1 | 73 | MEF2C |
5f28_C | 3e-16 | 1 | 78 | 1 | 73 | MEF2C |
5f28_D | 3e-16 | 1 | 78 | 1 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941167.1 | 1e-177 | MADS-box protein SOC1 isoform X1 | ||||
Refseq | XP_010941168.1 | 1e-177 | MADS-box protein SOC1 isoform X1 | ||||
Swissprot | A2Z9Q7 | 1e-78 | MAD56_ORYSI; MADS-box transcription factor 56 | ||||
TrEMBL | A0A2H3Y891 | 1e-132 | A0A2H3Y891_PHODC; MADS-box transcription factor 50-like isoform X1 | ||||
STRING | XP_008794766.1 | 1e-133 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22950.1 | 2e-55 | AGAMOUS-like 19 |