PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941149.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 342aa    MW: 36765.5 Da    PI: 7.9549
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941149.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-1377121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_010941149.1  77 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 121
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-1671127IPR009057Homeodomain-like
PROSITE profilePS5129415.40872126IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-675127IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1875124IPR006447Myb domain, plants
SMARTSM007175.3E-1176124IPR001005SANT/Myb domain
PfamPF002492.9E-1177121IPR001005SANT/Myb domain
CDDcd001672.20E-879122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVSVTAKPAD GGGGGGAAVL FFSDPHHYKQ PGSPMALPGL AGGGSLPTPS AAAATTASSS  60
DDASKKIRKP YTITKSRESW TEQEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK  120
YFLKVQKNGT SEHVPPPRPK RKAAHPYPQK ASKTAPIQAS SCLLEPGYAL TTDASSVLRN  180
STTNAIVSPR AHSSVQPVSA SHAIKDDVGP IGAVMANNCC CSSTESPSVT WQTCETTDQE  240
NHVPSLRVMP DFTQVYSFLG SVFEPNTSGH LLKLKEMDPI DVETVLLLMK NLSINLISPE  300
FEPHRRLLSS YSAGTEEVKP GSANNSPQVS ETMNTSFMVK GE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116176.10.0protein REVEILLE 6
SwissprotQ8H0W31e-101RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2H3Y8A30.0A0A2H3Y8A3_PHODC; protein REVEILLE 5-like isoform X6
STRINGXP_008794784.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.15e-86MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]