PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941065.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HD-ZIP
Protein Properties Length: 297aa    MW: 33368.8 Da    PI: 8.5962
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941065.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.7e-19127181256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq  +Lee+F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010941065.1 127 RKKLRLSKEQSAVLEECFKEHNTLNPRQKIALAKQLNLRPRQVEVWFQNRRARTK 181
                     788899***********************************************98 PP
2HD-ZIP_I/II124.55e-40127216191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlskeq+++LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk kq+E+d+e+Lk+++++l++en+rL+kev++Lr +l
  XP_010941065.1 127 RKKLRLSKEQSAVLEECFKEHNTLNPRQKIALAKQLNLRPRQVEVWFQNRRARTKVKQTEVDCEYLKKWCERLTQENRRLQKEVAKLR-AL 216
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-19296IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466893.94E-19117184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-18122186IPR009057Homeodomain-like
PROSITE profilePS5007117.2123183IPR001356Homeobox domain
SMARTSM003896.8E-17125187IPR001356Homeobox domain
PfamPF000463.1E-16127181IPR001356Homeobox domain
CDDcd000864.28E-16127184No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
SMARTSM003403.6E-20183226IPR003106Leucine zipper, homeobox-associated
PfamPF021832.2E-10183217IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMQEKVDLGL SLSLHPSQNT FPLPSSTPSF SPFPLYQKPQ WNNLLIPSSE AAQPMLKGID  60
VNRKPAMESL LNAEEEEEGE SSPDSTLSSV SEKRSTERDP FCNGEVHGLE RTGSRGVSDE  120
EDGEGSRKKL RLSKEQSAVL EECFKEHNTL NPRQKIALAK QLNLRPRQVE VWFQNRRART  180
KVKQTEVDCE YLKKWCERLT QENRRLQKEV AKLRALKLLL LPVNMMPPTT LTMCPSCRRV  240
IAPSNSSNFS STATTAATSS SPLANHQHHH LFPTAAYSSP NPWIMAPFGA AYLHQSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125131SRKKLRL
2175183RRARTKVKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019710959.10.0homeobox-leucine zipper protein HAT1
SwissprotP466002e-80HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A2H3ZV751e-146A0A2H3ZV75_PHODC; homeobox-leucine zipper protein HAT4-like
STRINGXP_008809454.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.14e-69Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]