PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940957.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 448aa MW: 48467.4 Da PI: 7.3977 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.6 | 3.1e-40 | 74 | 217 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec...eaessss 80 g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai+el+ + + + e++++ + XP_010940957.1 74 GGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDELPVLdgtfpevpkphhpeE-----KPpqdEPDAEAE 163 79*************************************************************999988866433321.....223333444444 PP TCP 81 sasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 + n++++ + +++ +s++s++s+ s+l+l++ e rakar rarer ++k + + XP_010940957.1 164 PGYNQQQHLSLSKSGCSSNSETSKGSVLSLSRsEIRAKARDRARERVKDKEKDR 217 44456666778888899999************99************99998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.9E-39 | 74 | 215 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.134 | 75 | 133 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.527 | 196 | 215 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MEMEENHACK RSRVGNGTAI SSSQAAKIGR KMQHHDDDDD DGEVRGGGAT AAESRVMSWH 60 HPSSRIFRVS RTSGGKDRHS KVYTAKGLRD RRVRLSVSTA IQFYDLQDRL GYDQPSKAIE 120 WLIKAAAAAI DELPVLDGTF PEVPKPHHPE EKPPQDEPDA EAEPGYNQQQ HLSLSKSGCS 180 SNSETSKGSV LSLSRSEIRA KARDRARERV KDKEKDRDDG HVAISHHQNV NPCLNSQTSF 240 TELLTGGSST NGADVATAQA NSSVNRLQKQ MQHLPAVTTT ADYFSQAGLF PQAQKSHQLP 300 SGFSSQAHFG NSSPMGMAPL NIAATAAGAG DHPEMQQFYF LQDHLMPASA MPPGPGDYNL 360 NFPISPGLAG FNRGTLQSNS PSQLPHHHLQ RLSSPVDGSN LPFFFSSAAS AAAATSTENQ 420 FSAGFDGRLQ LCYGDGYRHS DLKGKGKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-26 | 80 | 134 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-26 | 80 | 134 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00639 | PBM | Transfer from Lj6g3v1946420 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940957.1 | 0.0 | transcription factor PCF6 | ||||
Refseq | XP_010940963.1 | 0.0 | transcription factor PCF6 | ||||
Refseq | XP_010940967.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | A0A2H3XJS1 | 0.0 | A0A2H3XJS1_PHODC; transcription factor PCF6-like | ||||
STRING | XP_008784856.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-45 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |