PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940911.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 361aa MW: 37169.8 Da PI: 4.9002

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940911.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.2	8.9e-36	62	139	7	83
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssas 83 r++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++ ++ XP_010940911.1 62 RSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIATtvdgtlkiP-------TD 139 89*********************************************************88888444322222221.......22 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.419	63	117	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.4E-30	63	153	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MDLQKQEEEE DEDSQRTDLR MGGGGRGAAM PVHHRLIVPK PEPMEFIGAG PLPFLKRRPA 60 GRSKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIRWLLQHA EPAIIAATGT 120 GTVPAIATTV DGTLKIPTDV SSFSGYTTSA GGEESARKKL QPTRATAVAA NGGGVAAVPY 180 CCPVAVTDPL LQGGGAISIS TGLAPIASVG AAPAGLVPMW AVGNTVGGRV IPPGALWMLP 240 PSSAIAAGPS TQQPQIWTFP TPPQIINLAG TGPVPAVFPG SVPGLNLVDA QPPPADGSAA 300 VGGKRGGDGA SAAGGAGKTQ ELQLMGESVA SQHGQEAEEQ RQEPEEEEED EEPLSESSPE 360 D

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MDLQKQEEEE DEDSQRTDLR MGGGGRGAAM PVHHRLIVPK PEPMEFIGAG PLPFLKRRPA  60
GRSKDRHTKV EGRGRRIRMP AACAARIFQL TRELGHKSDG ETIRWLLQHA EPAIIAATGT  120
GTVPAIATTV DGTLKIPTDV SSFSGYTTSA GGEESARKKL QPTRATAVAA NGGGVAAVPY  180
CCPVAVTDPL LQGGGAISIS TGLAPIASVG AAPAGLVPMW AVGNTVGGRV IPPGALWMLP  240
PSSAIAAGPS TQQPQIWTFP TPPQIINLAG TGPVPAVFPG SVPGLNLVDA QPPPADGSAA  300
VGGKRGGDGA SAAGGAGKTQ ELQLMGESVA SQHGQEAEEQ RQEPEEEEED EEPLSESSPE  360
D

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681}.
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269\|PubMed:12000681, ECO:0000269\|PubMed:9338963}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940911.1	0.0	transcription factor PCF2
Swissprot	A2YXQ1	3e-72	PCF2_ORYSI; Transcription factor PCF2
Swissprot	Q6ZBH6	3e-72	PCF2_ORYSJ; Transcription factor PCF2
TrEMBL	A0A2H3Z7Y9	1e-172	A0A2H3Z7Y9_PHODC; transcription factor PCF2-like
STRING	XP_008809784.1	1e-172	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-47	TCP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]