PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940885.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRAS | ||||||||
Protein Properties | Length: 652aa MW: 72713.5 Da PI: 6.0312 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 419.9 | 2.2e-128 | 269 | 637 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfs 94 lv+lL++cAe +ssg++e++ +Larl elasp+g+p++R++ayfteALa ++ +++++++ pp+ +++ + ++al+l+++vsPi+kf XP_010940885.1 269 LVSLLTSCAESISSGNHEAIAFYLARLGELASPRGSPIHRVVAYFTEALALCAVKLWPHIFSITPPRVLVDQSgDNDDATALQLLNQVSPIPKFL 363 689*************************************************************999988877788999**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+La+R+++p ++RiTg+g+ s++ l+ tg rLa+fAe++++pfef++ v++rled+ XP_010940885.1 364 HFTLNERLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLACRANPPSHVRITGIGE----SRQDLHDTGARLARFAEAFNLPFEFHA-VVDRLEDV 453 *******************************************************....9**************************.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +l++L+vk+++++aVn+vl++h++l ++ + ++L l++s++P +v ++eqea+hn++++ +r++++l+yysa+fdsl+ +lp++s +rik XP_010940885.1 454 RLWMLHVKREDCVAVNCVLMMHKTLYDENGGA--LMDLLGLIRSTNPAIVLMAEQEAQHNEPRWETRLANSLQYYSAIFDSLDCSLPEDSLARIK 546 ***********************996655444..479********************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373 +E++ ++rei+n+vaceg+er+ rhe++e+Wr+ +e+ GF+ + ++e+++ q +l+lr+++++ y+++ ees+ l+l W +++L++vSaW XP_010940885.1 547 IEEM-FAREIRNLVACEGSERVDRHEKFERWRKLMEDGGFRCMGIGEREMLQSRLILRMYNGENYSIDkqgEESDGLTLKWLNQSLYTVSAW 637 ****.********************************************************999****777779****************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.26 | 243 | 615 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-126 | 269 | 637 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MLAGCSSALL SPRHQLRSDA SVQLQGSHFQ LQEKHHTSQQ RMGTQRFDLP CSFSRKDATR 60 VAISLEKPAE TRSSSCTFRP NPVTASSSSV VARAVSWEGR IEITEGGPWE RRRSSKRSHE 120 RSSSEEEDSC LDRAKRTRTG DTTGLVVGED DIWLPQCTKK HPLVEEEEEE EKVLLVPNAA 180 LFPFFTSASS TLVGSFETGR GSGTGVQPNN KSQSDSSSSS DTRSSSPKQH RDSSDNVARN 240 GPQIPYPSGF ASMVGQGENT QTEQQGLELV SLLTSCAESI SSGNHEAIAF YLARLGELAS 300 PRGSPIHRVV AYFTEALALC AVKLWPHIFS ITPPRVLVDQ SGDNDDATAL QLLNQVSPIP 360 KFLHFTLNER LLRAFEGKDR VHIIDFDIKQ GLQWPSLFQS LACRANPPSH VRITGIGESR 420 QDLHDTGARL ARFAEAFNLP FEFHAVVDRL EDVRLWMLHV KREDCVAVNC VLMMHKTLYD 480 ENGGALMDLL GLIRSTNPAI VLMAEQEAQH NEPRWETRLA NSLQYYSAIF DSLDCSLPED 540 SLARIKIEEM FAREIRNLVA CEGSERVDRH EKFERWRKLM EDGGFRCMGI GEREMLQSRL 600 ILRMYNGENY SIDKQGEESD GLTLKWLNQS LYTVSAWAPN DVAGSSATSQ PS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-69 | 261 | 639 | 11 | 380 | Protein SCARECROW |
5b3h_A | 3e-69 | 261 | 639 | 10 | 379 | Protein SCARECROW |
5b3h_D | 3e-69 | 261 | 639 | 10 | 379 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | RRSSKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116113.1 | 0.0 | protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A2H3YLZ4 | 0.0 | A0A2H3YLZ4_PHODC; protein DWARF AND LOW-TILLERING | ||||
STRING | XP_008800814.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-160 | GRAS family protein |