PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940837.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 664aa    MW: 73612.6 Da    PI: 5.3904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940837.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10601643246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rW++ + el+++a++q+G++ ++ I + ++ +Rt+ q+k+++ +
   XP_010940837.1 601 VRWSKADTELFYQAIRQFGTD-FAMIQQLFP-NRTRHQVKLKFKN 643
                      59*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159634.3E-27593661No hitNo description
PROSITE profilePS5129310.603598649IPR017884SANT domain
SMARTSM007171.4E-9599647IPR001005SANT/Myb domain
CDDcd001671.13E-7602643No hitNo description
SuperFamilySSF466891.87E-10602649IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-6602644IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MSNAPGLVSP SAPCFRGRDL APSGLFRSGL FLTARNAKRA PLPLPSLVFQ DHPEASHCKD  60
LHIDGEKEEA SQHDQERAVE NADTFFSTEY LDDSFQHGPT TVSCQDGPHA AQSDGNFQAI  120
PEKPAEEIMM MSFGMESLDD ISFSPSAAAV KQVGKFQPKL ASRPKGGKAK SVSFALPNAS  180
ETTAPSVETC SEGNFTRTDP PVGDVINDGY LDNHQQSSSV NYDFNGDFQM DDGKLEEEDI  240
SESSGLESFN TLLSLPISTA ARSVGKFQPK PSARTENVKS NASAVQTGAM ECVQCECDSL  300
PPEAESLEVH ASGFPADSLV DSAMPMPSEL AQEQAELFEA CTLEAATLGG RKTTQTIEIS  360
SERDNHVSGE REPTELLQDI CVEAHSPNVE ELTQLIQEEK HNSETVEDIA ASKSSRKLRK  420
QIYMHGTGKP EGGTDEDQSD DEYRGEDVPR KKRVPKKSKG NMTEKKKPGK KRKRASGKPD  480
SISEELPKKR FPHGTRQKRR QVNKVLLETP EDEIDRRQLR IKDLIMLAEA KERISSKEAA  540
TLGKSFPNQS TGSFPSRTHL DEGNLFGEEE EQNLDGEGNH NIQPNSTKLN YHSYMNRPQS  600
VRWSKADTEL FYQAIRQFGT DFAMIQQLFP NRTRHQVKLK FKNEERKHPL QVHDALVHRS  660
KDVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450472KKRVPKKSKGNMTEKKKPGKKRK
2454473PKKSKGNMTEKKKPGKKRKR
3468474GKKRKRA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116108.10.0uncharacterized protein LOC105059291 isoform X1
TrEMBLA0A3Q0HWY50.0A0A3Q0HWY5_PHODC; uncharacterized protein LOC103703755 isoform X2
TrEMBLA0A3Q0HWY90.0A0A3Q0HWY9_PHODC; uncharacterized protein LOC103703755 isoform X7
STRINGXP_008784941.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-39MYB_related family protein