PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940818.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRF

Protein Properties

Length: 347aa MW: 38247 Da PI: 8.4615

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940818.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	6.9e-25	73	117	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_010940818.1 73 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 117 79****************************************986 PP
2	QLQ	65.1	1.7e-22	12	47	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKyL+a++PvPp+Ll +i++ XP_010940818.1 12 PFTASQWQELEHQALIYKYLIAGVPVPPDLLIPIRR 47 9*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.6E-13	11	47	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.7E-17	12	46	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.187	12	47	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.762	73	117	IPR014977	WRC domain
Pfam	PF08879	4.1E-21	74	116	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MNSAAAGGCR PPFTASQWQE LEHQALIYKY LIAGVPVPPD LLIPIRRSFE AAHARFYHHP 60 ALGYYSFYGK KLDPEPGRCR RTDGKKWRCS KDAYPDSKYC ERHMHRGRNR SRKPVESQTF 120 SQSQSSSSTM TSLAPSGSSA SGSGSGSFQS IPLHSISGGN NLQGSYPWRA SSSQLHTDPG 180 SYGIGSSSRY LSEVKPGVDE HSFFSEASGS ARGLGTDSSV DSSWHLMPSR VSSFPLSKAR 240 DPSILQSAYP QFQSVQDLGQ VTICSLSKHE QRHSFFGSDF GSAEPVKHEG QSLRPFFDEW 300 PKTRDSWSDL EEERSNRTSF STTQLSISIP MASSDFSTTS SRSPNDD

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MNSAAAGGCR PPFTASQWQE LEHQALIYKY LIAGVPVPPD LLIPIRRSFE AAHARFYHHP  60
ALGYYSFYGK KLDPEPGRCR RTDGKKWRCS KDAYPDSKYC ERHMHRGRNR SRKPVESQTF  120
SQSQSSSSTM TSLAPSGSSA SGSGSGSFQS IPLHSISGGN NLQGSYPWRA SSSQLHTDPG  180
SYGIGSSSRY LSEVKPGVDE HSFFSEASGS ARGLGTDSSV DSSWHLMPSR VSSFPLSKAR  240
DPSILQSAYP QFQSVQDLGQ VTICSLSKHE QRHSFFGSDF GSAEPVKHEG QSLRPFFDEW  300
PKTRDSWSDL EEERSNRTSF STTQLSISIP MASSDFSTTS SRSPNDD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940818.1	0.0	growth-regulating factor 5
Swissprot	Q6AWY4	1e-114	GRF5_ORYSJ; Growth-regulating factor 5
TrEMBL	A0A2H3ZEW0	0.0	A0A2H3ZEW0_PHODC; growth-regulating factor 4-like
STRING	XP_008812758.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-48	growth-regulating factor 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]