PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 137aa MW: 15574.5 Da PI: 9.2689 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.3 | 2.4e-15 | 71 | 116 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++++ +G+g+Wk+I+r+ +Rt q+ s+ qk+ XP_010940770.1 71 KPWTEEEHRLFLQGLVTYGKGDWKSISRHSVVTRTSLQVASHAQKF 116 58******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.509 | 65 | 121 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.48E-17 | 66 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 69 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-12 | 71 | 115 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 6.1E-16 | 71 | 120 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.65E-10 | 72 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MASSHDIGLS QAEWSPLEEM VLTLKDELQK EEDGNSGDGC GMDMAPEQCP PKGQNTSSGS 60 RRHGQKRRKA KPWTEEEHRL FLQGLVTYGK GDWKSISRHS VVTRTSLQVA SHAQKFFIRQ 120 KQDMERKRKS IHDITNP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940770.1 | 1e-99 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-27 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3Q0I0I6 | 1e-42 | A0A3Q0I0I6_PHODC; transcription factor DIVARICATA-like | ||||
STRING | XP_008789580.1 | 2e-43 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 5e-30 | MYB family protein |
Publications ? help Back to Top | |||
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