PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940766.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 303aa    MW: 34103.3 Da    PI: 7.8885
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940766.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
   XP_010940766.1 14 KGPWSPEEDRQLKEYIEKYGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.52.7e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T +Ed  + ++ +  G++ W+ Ia+ ++ gRt++++k++w++
   XP_010940766.1  69 GDFTDDEDRTICNLYATIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.87966IPR017930Myb domain
SuperFamilySSF466892.04E-2811109IPR009057Homeodomain-like
SMARTSM007175.0E-141364IPR001005SANT/Myb domain
PfamPF002493.7E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-241569IPR009057Homeodomain-like
CDDcd001676.88E-111662No hitNo description
SMARTSM007171.0E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129416.79967117IPR017930Myb domain
PfamPF002494.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDRQLKEYIE KYGTGGNWIA LPHKAGLNRC GKSCRLRWLN  60
YLRPNIKHGD FTDDEDRTIC NLYATIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLGF  120
PPSQRKTQQQ LQKQQHQQHL FPYPLEICRT GSFSSPPSLE GVQNSQYLLN PMAATTFSST  180
LPQGSMHQSQ VKDSSSLLMF GSEHSCSSSD GSCTQISYGS NVVVDYELCN GGQQMRSLES  240
FLYEETQKLL LGDGEASLEY NIEEIKPLVG PNNWCNSLFG DDLSSATTKD ISFKTTGKAM  300
YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940766.10.0transcription factor RAX1
TrEMBLA0A2H3YLH31e-158A0A2H3YLH3_PHODC; transcription factor MYB36-like
STRINGXP_008800556.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-75myb domain protein 36