PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB_related | ||||||||
Protein Properties | Length: 173aa MW: 19719.2 Da PI: 9.9621 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.5e-16 | 107 | 152 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++++ + +G+g+Wk+I+r+ ++t+ q+ s+ qk+ XP_010940655.1 107 KPWTEEEHRLFLQGLATYGKGDWKSISRHAVVTKTPVQVASHAQKF 152 58******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.704 | 6 | 60 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.66E-9 | 7 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.016 | 10 | 62 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.18 | 101 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-17 | 103 | 157 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 105 | 155 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-16 | 107 | 156 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-13 | 107 | 151 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-11 | 107 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.32E-11 | 108 | 153 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDSSHDIGLS PAEWSPFEEM VLELALLANP EGTSDRWSRI SANFSRKSPE QILYHHYQIL 60 KDDLQKKEGG NFGDGCSMGM APEQRPPKGQ NTSFGSGRRG LERRKAKPWT EEEHRLFLQG 120 LATYGKGDWK SISRHAVVTK TPVQVASHAQ KFFIRQKQDM ERKRKSIHDV TNP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019710929.1 | 1e-118 | transcription factor SRM1-like | ||||
TrEMBL | A0A3Q0I0I6 | 3e-59 | A0A3Q0I0I6_PHODC; transcription factor DIVARICATA-like | ||||
STRING | XP_008789580.1 | 4e-60 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 2e-40 | MYB family protein |