PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940438.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 600aa    MW: 67546.8 Da    PI: 7.521
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940438.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-185197148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT  Ed+ lv+avkq+ g++Wk+Ia+ ++ gR++ qc +rwqk+l
   XP_010940438.1 51 KGGWTDKEDDMLVKAVKQFNGKNWKRIAELFP-GRSDVQCLHRWQKVL 97
                     688*****************************.************986 PP
2Myb_DNA-binding62.86.7e-20103149148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+++v++v+++G++ W+ Ia+ ++ gR +kqc++rw+++l
   XP_010940438.1 103 KGTWTKEEDDRIVKLVAKHGSKKWSDIAKSLP-GRIGKQCRERWHNHL 149
                      799*****************************.*************97 PP
3Myb_DNA-binding52.11.5e-16155197145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+  l++a++++G++ W+ Ia+ ++ gR  +++k++w+
   XP_010940438.1 155 KDAWTPEEEVTLIHAHQKYGNK-WAEIAKFLP-GRASNSIKNHWN 197
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4354697IPR017930Myb domain
SuperFamilySSF466892.08E-1547104IPR009057Homeodomain-like
SMARTSM007171.4E-155099IPR001005SANT/Myb domain
PfamPF002491.6E-155197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2253113IPR009057Homeodomain-like
CDDcd001671.32E-135497No hitNo description
PROSITE profilePS5129431.95398153IPR017930Myb domain
SuperFamilySSF466891.04E-31100196IPR009057Homeodomain-like
SMARTSM007171.3E-17102151IPR001005SANT/Myb domain
PfamPF002498.3E-19103149IPR001005SANT/Myb domain
CDDcd001677.87E-16105149No hitNo description
Gene3DG3DSA:1.10.10.605.3E-27114157IPR009057Homeodomain-like
SMARTSM007171.0E-15154202IPR001005SANT/Myb domain
PROSITE profilePS5129421.007154204IPR017930Myb domain
PfamPF002492.7E-15155197IPR001005SANT/Myb domain
CDDcd001675.08E-12157197No hitNo description
Gene3DG3DSA:1.10.10.602.1E-22158204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MVEEAKTEDG KDDRTLEVSL PLCIPDSDSS CDTTPGAIPG RTNGPTRRST KGGWTDKEDD  60
MLVKAVKQFN GKNWKRIAEL FPGRSDVQCL HRWQKVLNPE LVKGTWTKEE DDRIVKLVAK  120
HGSKKWSDIA KSLPGRIGKQ CRERWHNHLN PAIKKDAWTP EEEVTLIHAH QKYGNKWAEI  180
AKFLPGRASN SIKNHWNCSL KKKLGSYLAS DIPTQPFGNP AIKLNNLQEK VGCLKPHSVK  240
LVTPDLKPSV DNHFMASSVG LDFQNTSIGR SDLSMDHSLI GNSKCLNVDY QHTSTDDSEC  300
SKLEVKMSPT SDPKCRKSEA DFAANPSDCQ EDRIPCSSGR TNLSCSTEFS CHLTNLLHGD  360
DYCHANMSDD LHGTPTIQSK AQPSVFYELC SHVPPKESSN KRRPPKISEE HAFDKSNLTI  420
KNMDLNYETD ILNGQTFRES KNDMVDDHNQ VTGTPLSCNS GNFGSLPYPT MQFTHEGSSL  480
SGERKSKLEN YIRQTQNPVH YCTLPNISSN HTYSPRDPIS YLRAEAKSFK NTPSIFRRRR  540
LVDLSITDIV NIVRFSQSSH DCQKPDISDA TKSVERKLEE DFDMEFRSCF QMVISSPLTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-65512046159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-65512046159MYB PROTO-ONCOGENE PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1535540FRRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940439.10.0transcriptional activator Myb
TrEMBLA0A2H3ZRC90.0A0A2H3ZRC9_PHODC; transcriptional activator Myb-like isoform X1
STRINGXP_008778552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.11e-88Homeodomain-like protein