PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22233.2 Da PI: 8.5007 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.3 | 1.2e-15 | 52 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + k g+Wv+e+r+p k+ r++lg++ +e+Aa+a++ a+ +l+g XP_010940400.1 52 PVYHGVRER-KGGKWVCEVREPH---KKSRIWLGTYAKPEMAARAHDVAAIALRG 102 689***955.59******99962...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-11 | 52 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.929 | 53 | 110 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-29 | 53 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-20 | 53 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-27 | 53 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.28E-25 | 54 | 112 | No hit | No description |
PRINTS | PR00367 | 6.1E-10 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-10 | 92 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MDCEESSSSS SFSSNEVPAT SSPSFSSTSP QLPAKSPKRR AGRKKFRETR HPVYHGVRER 60 KGGKWVCEVR EPHKKSRIWL GTYAKPEMAA RAHDVAAIAL RGKAALLNFP DSAWSLPRAA 120 SSSAEDIRRA ASKAAEMFRP AVSSPAPEVR PAAVFVDEEA LFNMPGLLDD MARGLMLTPP 180 AMQEAFDWDS VECHMDLSLW TD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-13 | 51 | 110 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940400.1 | 1e-145 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 3e-65 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 3e-65 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A2H3Z2P9 | 1e-111 | A0A2H3Z2P9_PHODC; dehydration-responsive element-binding protein 1F-like | ||||
STRING | XP_008807523.1 | 1e-111 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 2e-59 | C-repeat/DRE binding factor 2 |
Publications ? help Back to Top | |||
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