PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940284.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 835aa    MW: 93879.8 Da    PI: 6.4063
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940284.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.8e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   +++
  XP_010940284.1 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WNE 216
                     99*****************************8544444..49************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010940284.1 217 KNQLLLGIRRA 227
                     9999****997 PP

2Auxin_resp1171.6e-38252335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++ +sdldp+rWpnS+Wrs+k
  XP_010940284.1 252 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITEISDLDPLRWPNSHWRSVK 335
                     79********************************87599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-49111255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-41119241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-20125226No hitNo description
PfamPF023625.0E-21126227IPR003340B3 DNA binding domain
SMARTSM010191.7E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.21126228IPR003340B3 DNA binding domain
PfamPF065072.8E-33252335IPR010525Auxin response factor
SuperFamilySSF542771.57E-6701780No hitNo description
PROSITE profilePS5174523.518706790IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MKLSTAGLGQ QAQEEKRCLN SELWHACAGP LVCLPTLGTR VVYFPQGHSE QVAVSTNKEV  60
EGQIPNYPNL PPQLICQLHD VTMHADVETD EVYAQMTLQP LNPQEMNDAY LPAEMGIISK  120
QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELVARD LHDVEWKFRH  180
IFRGQPKRHL LTTGWSVFIS AKRLVAGDSV LFIWNEKNQL LLGIRRASRP QTVMPSSVLS  240
SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLS KYVKAVFHTR VSVGMRFRML  300
FETEESSVRR YMGTITEISD LDPLRWPNSH WRSVKVGWDE STAGERPPRV SLWEIEPLTT  360
FPMYPSLFPL RLKRPWYPGV PSFHDEGNAL MWLRGSTGER GLPSLNFQSP GMGSWVQQRM  420
ESTLLGNDHD QYQVMTAAAL PGTRGSDYVN QQFLHFQQPS QLPQQSYSTS PSSQQQIIQR  480
AFQQQIICPQ SQNISENLTH NVLHQQLQQS ISNQKQVQHT QTYPELYQIP GTHVQQEQSP  540
LPSQLREKLE FPDSSVNFST VMTSGCVQSM LGSAYPEGSS NILDVARLGQ PMMSEQNQQT  600
WEPKFTMSQS TTFGNTILLP SFPGKGGSMG TENSSLDMQN HTLFGVNIDS SSLLSHAVPS  660
LRPISITNDI STMTYASSSL QNSIYGGLKE SSAVLQNAEE ADPTTKTFVK VYKSGSVGRS  720
LDITRFNSYG ELREELGQMF GIEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWESFVNNV  780
WYIKILSPED VQEMGKPAIE PRXSSQIERK QKWHVTAAHI FWRICFIINE TAWTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-165835640388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00033PBMTransfer from AT5G37020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116087.10.0auxin response factor 12-like isoform X2
RefseqXP_029116088.10.0auxin response factor 12-like isoform X2
SwissprotQ258Y50.0ARFL_ORYSI; Auxin response factor 12
TrEMBLA0A2H3YVJ60.0A0A2H3YVJ6_PHODC; Auxin response factor
STRINGXP_008804149.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0auxin response factor 8