PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 835aa MW: 93879.8 Da PI: 6.4063 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.8 | 8.8e-23 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ F +a++L +gD+v+F +++ XP_010940284.1 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELVARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WNE 216 99*****************************8544444..49************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_010940284.1 217 KNQLLLGIRRA 227 9999****997 PP | |||||||
2 | Auxin_resp | 117 | 1.6e-38 | 252 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++ +sdldp+rWpnS+Wrs+k XP_010940284.1 252 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITEISDLDPLRWPNSHWRSVK 335 79********************************87599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.1E-49 | 111 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-41 | 119 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-20 | 125 | 226 | No hit | No description |
Pfam | PF02362 | 5.0E-21 | 126 | 227 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-23 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.21 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-33 | 252 | 335 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.57E-6 | 701 | 780 | No hit | No description |
PROSITE profile | PS51745 | 23.518 | 706 | 790 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MKLSTAGLGQ QAQEEKRCLN SELWHACAGP LVCLPTLGTR VVYFPQGHSE QVAVSTNKEV 60 EGQIPNYPNL PPQLICQLHD VTMHADVETD EVYAQMTLQP LNPQEMNDAY LPAEMGIISK 120 QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELVARD LHDVEWKFRH 180 IFRGQPKRHL LTTGWSVFIS AKRLVAGDSV LFIWNEKNQL LLGIRRASRP QTVMPSSVLS 240 SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLS KYVKAVFHTR VSVGMRFRML 300 FETEESSVRR YMGTITEISD LDPLRWPNSH WRSVKVGWDE STAGERPPRV SLWEIEPLTT 360 FPMYPSLFPL RLKRPWYPGV PSFHDEGNAL MWLRGSTGER GLPSLNFQSP GMGSWVQQRM 420 ESTLLGNDHD QYQVMTAAAL PGTRGSDYVN QQFLHFQQPS QLPQQSYSTS PSSQQQIIQR 480 AFQQQIICPQ SQNISENLTH NVLHQQLQQS ISNQKQVQHT QTYPELYQIP GTHVQQEQSP 540 LPSQLREKLE FPDSSVNFST VMTSGCVQSM LGSAYPEGSS NILDVARLGQ PMMSEQNQQT 600 WEPKFTMSQS TTFGNTILLP SFPGKGGSMG TENSSLDMQN HTLFGVNIDS SSLLSHAVPS 660 LRPISITNDI STMTYASSSL QNSIYGGLKE SSAVLQNAEE ADPTTKTFVK VYKSGSVGRS 720 LDITRFNSYG ELREELGQMF GIEGQLEDPL RSGWQLVFVD RENDVLLLGD DPWESFVNNV 780 WYIKILSPED VQEMGKPAIE PRXSSQIERK QKWHVTAAHI FWRICFIINE TAWTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-165 | 8 | 356 | 40 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116087.1 | 0.0 | auxin response factor 12-like isoform X2 | ||||
Refseq | XP_029116088.1 | 0.0 | auxin response factor 12-like isoform X2 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A2H3YVJ6 | 0.0 | A0A2H3YVJ6_PHODC; Auxin response factor | ||||
STRING | XP_008804149.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |