PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940220.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

WOX

Protein Properties

Length: 281aa MW: 31634.3 Da PI: 5.4445

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940220.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.4e-21	100	160	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ XP_010940220.1 100 RQRWTPTPMQLQILESIFDEgNGTPSKQKIKDITLELsqhgQISETNVYNWFQNRRARSKR 160 89***************99************************************97 PP
2	Wus_type_Homeobox	103.3	1.7e-33	99	162	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq XP_010940220.1 99 ARQRWTPTPMQLQILESIFDEGNGTPSKQKIKDITLELSQHGQISETNVYNWFQNRRARSKRKQ 162 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.35E-18	93	164	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-17	93	165	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.641	96	161	IPR001356	Homeobox domain
SMART	SM00389	2.1E-13	98	165	IPR001356	Homeobox domain
CDD	cd00086	2.10E-13	100	162	No hit	No description
Pfam	PF00046	1.4E-18	100	160	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEWEKACAGN TSGQTNRGEE EERRGGGEGM AEGVLYVKVM TDEQMEVLRR QISVYATICE 60 QLVEMHKAVT AHQDSLAGMR LGRLYCDPLM TPGGHKLTAR QRWTPTPMQL QILESIFDEG 120 NGTPSKQKIK DITLELSQHG QISETNVYNW FQNRRARSKR KQTAALPNNT DSEVEADDES 180 PSEKKPKSEK QTHENLPSRT DDLSIHGTQM NSEMRSMDLE TNPRQGMYAS NDISRSSGSF 240 GQMSFYENAL SNPRIDHLIG KMEIPQSFSP CRPGESYDLI G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	161	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940220.2	0.0	WUSCHEL-related homeobox 8 isoform X2
Swissprot	Q5QMM3	1e-114	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2H3ZE14	1e-179	A0A2H3ZE14_PHODC; WUSCHEL-related homeobox 8-like
STRING	XP_008812362.1	1e-179	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-72	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]