PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | YABBY | ||||||||
Protein Properties | Length: 192aa MW: 21142.7 Da PI: 5.1505 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 176.5 | 1.7e-54 | 8 | 161 | 4 | 167 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + +eq+ yvqC+fC+t+l+vsvP +sl+kvvtvrCGhC+ llsv+l + + + +l ++ ++++++ee + + ++ + XP_010940212.1 8 LELPEQLGYVQCSFCTTVLLVSVPCSSLLKVVTVRCGHCAGLLSVSLVRTDFV-PL------QLLGSIGNDEEKHEECTV----DDPPGRACEDG 91 6789****************************************998765533.22......223334444443333332....22222222222 PP YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 ++ne+++ p + p v++PPekrqr+Psaynrfikeeiqrika+ P+i+hreafs+aaknWahfP++ XP_010940212.1 92 DDEEDNEKKSPPDQTPvVNKPPEKRQRAPSAYNRFIKEEIQRIKAKEPNITHREAFSTAAKNWAHFPRVQ 161 222345555555444449*************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.7E-61 | 11 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.4E-8 | 104 | 158 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.6E-5 | 111 | 158 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSTDNSFLEL PEQLGYVQCS FCTTVLLVSV PCSSLLKVVT VRCGHCAGLL SVSLVRTDFV 60 PLQLLGSIGN DEEKHEECTV DDPPGRACED GDDEEDNEKK SPPDQTPVVN KPPEKRQRAP 120 SAYNRFIKEE IQRIKAKEPN ITHREAFSTA AKNWAHFPRV QAKGHGESCS TGEGENDGEM 180 DGRSQGICKK KP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029124405.1 | 1e-120 | protein YABBY 7-like | ||||
Swissprot | Q9LDT3 | 1e-48 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2H3ZE98 | 6e-96 | A0A2H3ZE98_PHODC; protein YABBY 7 | ||||
STRING | XP_008812180.1 | 1e-96 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-38 | YABBY family protein |
Publications ? help Back to Top | |||
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