PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940190.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 169aa    MW: 18582.7 Da    PI: 5.2696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940190.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.9e-181665255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykGVr +k +g+WvAe+r p++   r r++lg+++tae+Aa+a +aa  +l g
  XP_010940190.1 16 HYKGVRMRK-WGKWVAEVRLPNS---RERIWLGSYDTAEKAARAFDAASYCLCG 65
                    7******99.*******999833...5*********************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-271675No hitNo description
SMARTSM003805.1E-311679IPR001471AP2/ERF domain
PROSITE profilePS5103221.5751673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-291673IPR001471AP2/ERF domain
PfamPF008471.3E-111665IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-211674IPR016177DNA-binding domain
PRINTSPR003675.3E-101728IPR001471AP2/ERF domain
PRINTSPR003675.3E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MENPLPRPRE GSAVNHYKGV RMRKWGKWVA EVRLPNSRER IWLGSYDTAE KAARAFDAAS  60
YCLCGTQAVV NFPADPPNIP SPGRLTRNEI RAVASKHAHE APRAGPDEDA GPSNARQTAE  120
DVVGQMISSV PQELFSPQFF YLPLPLGSTT VGDLDADDDV EGSFSIWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-161173972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940190.21e-106ethylene-responsive transcription factor ERF016
SwissprotQ84QC28e-36ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2H3YLQ26e-69A0A2H3YLQ2_PHODC; ethylene-responsive transcription factor ERF016-like
STRINGXP_008800510.15e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]