PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940157.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 965aa    MW: 108965 Da    PI: 6.8711
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940157.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.15.8e-22127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+  + +r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_010940157.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFPWSAKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217
                     99*****************************8544444..48*****************7777899************************..788 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_010940157.1 218 NNQLLLGIRRA 228
                     8889****997 PP

2Auxin_resp121.56.2e-40253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_010940157.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-46112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-40120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-19126227No hitNo description
PfamPF023623.1E-20127228IPR003340B3 DNA binding domain
SMARTSM010196.4E-21127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.943127229IPR003340B3 DNA binding domain
PfamPF065078.7E-35253336IPR010525Auxin response factor
SuperFamilySSF542776.08E-7825908No hitNo description
PfamPF023093.9E-7825917IPR033389AUX/IAA domain
PROSITE profilePS5174521.836833917IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MRLSTSGLPQ QTQEGEQKCL NSELWHACAG PLVSLPAVGN RVVYFPQGHS EQVAASTNKE  60
IDAHIPNYPN LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSLEEQKDP YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFPWSAKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESIAGERQPR VSLWEIEPLT  360
TFPMYPSAFP LRLKRPWPSG LPSLQGCKDD DIRLNYPLMW LRDGDRRMPS LSFQGLGTTP  420
WMQPRLNASM LGIQPDMYQA VAAAALQEMR TVDPPKQTAP AILHFQQPQS LTSRSTPLLA  480
SQILHHMQPN SQQALIQPIQ ESHGQNQTQS QFLQHQLQHY NSFGDRQQLQ PSLLQQKQQH  540
QPQQQQHQLL QQQQHQQLQQ QQQHQQSQQH QQLPQQHQQL PQQQQQQSQQ QQIHQQQQQQ  600
LQQQQHQQIQ QTHLSNHPQV PNAVSSLSQL ASTSQSLSSS LQTISSFCRQ QSFPDININP  660
ATTSDVSPLH NILRSFSPEE TPNVLNLPRT SSLSTSVTWP SKRLAVESML PTETRCLQSQ  720
VAQLGQESNI SQHSVTLPPF PGRDYSLDQE CNTDAQNHLL FGVHIDSSSL LMQNGMPNLR  780
SIGSGTDSTA MPFLTIAGTD FPLNQAITSS NCIEEPGFLQ SPENVGHMNP QSGTFVKVYK  840
SGSYGRSLDI TKFNSYPELR TELGRLFGLE GQLEDPMRSG WQLVFIDREN DVLLLGDDPW  900
QEFVNNVWCI RILSPQEMQT RKEGGELPTT APTKRFPSGS YDEYMNKQDS RNMSNGIASM  960
LPLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581135741388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124496.10.0auxin response factor 17
SwissprotA2YG670.0ARFQ_ORYSI; Auxin response factor 17
TrEMBLA0A2H3ZIL80.0A0A2H3ZIL8_PHODC; Auxin response factor
STRINGXP_008776642.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6