PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARF | ||||||||
Protein Properties | Length: 965aa MW: 108965 Da PI: 6.8711 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.1 | 5.8e-22 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+ + +r++lt+GW+ Fv+a++L +gD+v+F +++ XP_010940157.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFPWSAKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217 99*****************************8544444..48*****************7777899************************..788 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_010940157.1 218 NNQLLLGIRRA 228 8889****997 PP | |||||||
2 | Auxin_resp | 121.5 | 6.2e-40 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k XP_010940157.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-46 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.11E-19 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 3.1E-20 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-21 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.943 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.7E-35 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 6.08E-7 | 825 | 908 | No hit | No description |
Pfam | PF02309 | 3.9E-7 | 825 | 917 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 21.836 | 833 | 917 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 965 aa Download sequence Send to blast |
MRLSTSGLPQ QTQEGEQKCL NSELWHACAG PLVSLPAVGN RVVYFPQGHS EQVAASTNKE 60 IDAHIPNYPN LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSLEEQKDP YLPAELGTPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR 180 HIFPWSAKRH LLTTGWSVFV SAKRLVAGDS VLFIWNENNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESIAGERQPR VSLWEIEPLT 360 TFPMYPSAFP LRLKRPWPSG LPSLQGCKDD DIRLNYPLMW LRDGDRRMPS LSFQGLGTTP 420 WMQPRLNASM LGIQPDMYQA VAAAALQEMR TVDPPKQTAP AILHFQQPQS LTSRSTPLLA 480 SQILHHMQPN SQQALIQPIQ ESHGQNQTQS QFLQHQLQHY NSFGDRQQLQ PSLLQQKQQH 540 QPQQQQHQLL QQQQHQQLQQ QQQHQQSQQH QQLPQQHQQL PQQQQQQSQQ QQIHQQQQQQ 600 LQQQQHQQIQ QTHLSNHPQV PNAVSSLSQL ASTSQSLSSS LQTISSFCRQ QSFPDININP 660 ATTSDVSPLH NILRSFSPEE TPNVLNLPRT SSLSTSVTWP SKRLAVESML PTETRCLQSQ 720 VAQLGQESNI SQHSVTLPPF PGRDYSLDQE CNTDAQNHLL FGVHIDSSSL LMQNGMPNLR 780 SIGSGTDSTA MPFLTIAGTD FPLNQAITSS NCIEEPGFLQ SPENVGHMNP QSGTFVKVYK 840 SGSYGRSLDI TKFNSYPELR TELGRLFGLE GQLEDPMRSG WQLVFIDREN DVLLLGDDPW 900 QEFVNNVWCI RILSPQEMQT RKEGGELPTT APTKRFPSGS YDEYMNKQDS RNMSNGIASM 960 LPLEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 11 | 357 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029124496.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | A2YG67 | 0.0 | ARFQ_ORYSI; Auxin response factor 17 | ||||
TrEMBL | A0A2H3ZIL8 | 0.0 | A0A2H3ZIL8_PHODC; Auxin response factor | ||||
STRING | XP_008776642.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12712 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |