PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940132.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 303aa    MW: 34724 Da    PI: 7.4165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940132.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_010940132.1 14 KGLWSPEEDEKLYNHIARFGIGCWSSVPKQAGLERCRKSCRLRWINYL 61
                     678*******************************************97 PP

2Myb_DNA-binding45.71.5e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++eE+ l++ +++ lG++ W+ Ia+ ++ gRt++++k+ w++
   XP_010940132.1  67 RGNFSQEEEALIISLHEVLGNR-WSHIAAQLP-GRTDNEIKNLWNS 110
                      89********************.*********.*********9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.763961IPR017930Myb domain
SuperFamilySSF466899.17E-2911108IPR009057Homeodomain-like
SMARTSM007175.0E-121363IPR001005SANT/Myb domain
PfamPF002496.2E-141461IPR001005SANT/Myb domain
CDDcd001672.32E-101761No hitNo description
PROSITE profilePS5129424.89262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-2665117IPR009057Homeodomain-like
SMARTSM007174.5E-1366114IPR001005SANT/Myb domain
PfamPF002492.8E-1367110IPR001005SANT/Myb domain
CDDcd001673.59E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRHPCCAKQ KIRKGLWSPE EDEKLYNHIA RFGIGCWSSV PKQAGLERCR KSCRLRWINY  60
LRPDLKRGNF SQEEEALIIS LHEVLGNRWS HIAAQLPGRT DNEIKNLWNS RLKKKLKQRG  120
INPITHKQLR ETGAQGEMPR PAVKPLFNPF PSFECQAATD PSGTNANLDH QLQQTHRPLE  180
QNEFMNNFDD YLVSRSNSGY WNYGEVLYVS DTYAIQESLN SRINSNSDIA ARMGSMPGKE  240
VFDSSSFEIK LESPLQTEIE AYEQRLNPCQ GLQQVESSEE FSSYLTTSLS RDLSDACLEC  300
FSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141167108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940132.10.0transcription factor MYB8-like
TrEMBLA0A2H3YBF80.0A0A2H3YBF8_PHODC; transcription factor MYB61-like
STRINGXP_008796017.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.38e-76myb domain protein 55