PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 34724 Da PI: 7.4165 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_010940132.1 14 KGLWSPEEDEKLYNHIARFGIGCWSSVPKQAGLERCRKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.7 | 1.5e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ l++ +++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_010940132.1 67 RGNFSQEEEALIISLHEVLGNR-WSHIAAQLP-GRTDNEIKNLWNS 110 89********************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.763 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.17E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.32E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.892 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-26 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.59E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRHPCCAKQ KIRKGLWSPE EDEKLYNHIA RFGIGCWSSV PKQAGLERCR KSCRLRWINY 60 LRPDLKRGNF SQEEEALIIS LHEVLGNRWS HIAAQLPGRT DNEIKNLWNS RLKKKLKQRG 120 INPITHKQLR ETGAQGEMPR PAVKPLFNPF PSFECQAATD PSGTNANLDH QLQQTHRPLE 180 QNEFMNNFDD YLVSRSNSGY WNYGEVLYVS DTYAIQESLN SRINSNSDIA ARMGSMPGKE 240 VFDSSSFEIK LESPLQTEIE AYEQRLNPCQ GLQQVESSEE FSSYLTTSLS RDLSDACLEC 300 FSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 117 | LKKKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940132.1 | 0.0 | transcription factor MYB8-like | ||||
TrEMBL | A0A2H3YBF8 | 0.0 | A0A2H3YBF8_PHODC; transcription factor MYB61-like | ||||
STRING | XP_008796017.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 8e-76 | myb domain protein 55 |