PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939931.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 352aa    MW: 38028.3 Da    PI: 8.6157
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939931.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.42.1e-32198254158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF
  XP_010939931.1 198 EEPIYVNAKQYRAILRRRQLRAKLEAQNKL-IKARKPYLHESRHLHAMKRARGSGGRF 254
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.3E-38196257IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.017197257IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-27199254IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-23200222IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860202222IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-23231254IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MPLDNANAFD TQHFSNKDSE HSSVTSVHSA SNCVDNFPSL WKQSGSHFPQ STYFKNFCMN  60
MGFLAQPDNQ MKQLGGQMPD QDSSSSQSTG QSHQEVSGTS EGNLHEQSIS AQAGNDKTCG  120
KQVEGHVNSV LFLGTPEAAF VSPRLDYGQS FACVPYTYAD PSFGGVLAAY GSPAIIHPQM  180
VGVPPSSRVP LPLEPAAEEP IYVNAKQYRA ILRRRQLRAK LEAQNKLIKA RKPYLHESRH  240
LHAMKRARGS GGRFLNTKQL EQQQQRPLLP PPPSVSTGLG NLSASNLHFE NGPSGSSAAP  300
TSSADVVRVS TSGGMLEQQG HLSFLSADFH SHVRSTQGGG DSGSQPRITI MR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-21198259263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939931.10.0nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_010939932.10.0nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A2H3XRW40.0A0A2H3XRW4_PHODC; nuclear transcription factor Y subunit A-6-like
STRINGXP_008787861.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-37nuclear factor Y, subunit A3