PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939857.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 364aa    MW: 40998.3 Da    PI: 4.5992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939857.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-19109158255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  XP_010939857.1 109 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 158
                     69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.41E-22109166IPR016177DNA-binding domain
SMARTSM003805.7E-38109172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32109167IPR001471AP2/ERF domain
PROSITE profilePS5103224.236109166IPR001471AP2/ERF domain
CDDcd000184.98E-33109168No hitNo description
PfamPF008471.7E-11110158IPR001471AP2/ERF domain
PRINTSPR003671.1E-11110121IPR001471AP2/ERF domain
PRINTSPR003671.1E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MCGGAIISDF MLPPTASRRL TADYRWPGLK KGGGRKKKGR KHEVVEFDDD FEADFEDFKD  60
ESEEDEEEVD VKPFAFASKA TFSRGSTTPK SVEFNGSAAR SAKRKRKNQY RGIRQRPWGK  120
WAAEIRDPRK GVRVWLGTFN TAEEAARAYD VEARRIRGKK AKVNFPEASA SAQKQNQKPT  180
LQAPKPALSE EQKLNDQDYD LYSTMDHMEV KEPADPEYMN SLPSVESSPP PEGTGILNFL  240
SDQGSNTVDY SDLGWEHETK NPEITSVLAP TITEGDESRF LEHGSPQKNL KITSDDAVQT  300
EENSAMKLSE ELSASESHMK FLIPYLEWSA YESVDSLFSC EVDQDGLSTM DLWSFDDLPT  360
ESIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21109166260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939857.10.0ethylene-responsive transcription factor 1 isoform X1
TrEMBLA0A2H3YLL81e-166A0A2H3YLL8_PHODC; ethylene-responsive transcription factor 1-like isoform X1
STRINGXP_008800471.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.23e-49related to AP2 12