PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 351aa MW: 39676.8 Da PI: 6.44 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.4 | 3.8e-23 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tgk XP_010939817.1 9 KRLENTSGRQVTYSKRRAGILKKAKELSILCDIDIILLMFSPTGK 53 789****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.0E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.189 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 4.44E-26 | 2 | 54 | No hit | No description |
PRINTS | PR00404 | 5.2E-18 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.4E-20 | 11 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-18 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-18 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGRVKLKIKR LENTSGRQVT YSKRRAGILK KAKELSILCD IDIILLMFSP TGKPTICLGE 60 RSNIEDVVAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSS AQTVEEFMNH 120 SRLLQAQISE VQKRLSYWSE PEKINSIDHI RAMEESLKHS LNQVQLHKEN LGKQLMSLEC 180 ASQFQNGIHL PLEIGGEQQS SNISWLHDNE GQPMMLPEES NLPPQRECST EVSLQGFPGY 240 FSTGKETEAD GQINDDTLDQ LGQNACLGLQ LAGHYPYRSY GLNLLHEKEF KPQAEVNLQE 300 ATVEYQMNSF EPPRPRYDAS IQTWASTSGS CGVTVFSNHS YRQQPTGLHD S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939817.1 | 0.0 | agamous-like MADS-box protein AGL65 isoform X2 | ||||
Swissprot | Q1PFA4 | 2e-94 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | A0A2H3YRH8 | 0.0 | A0A2H3YRH8_PHODC; agamous-like MADS-box protein AGL65 isoform X1 | ||||
STRING | XP_008802579.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 2e-85 | AGAMOUS-like 65 |
Publications ? help Back to Top | |||
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