PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939816.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

M-type_MADS

Protein Properties

Length: 359aa MW: 40542.9 Da PI: 6.44

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939816.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.4	4e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tgk XP_010939816.1 9 KRLENTSGRQVTYSKRRAGILKKAKELSILCDIDIILLMFSPTGK 53 789****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.189	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-31	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.68E-26	2	54	No hit	No description
SuperFamily	SSF55455	1.57E-25	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.7E-20	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGRVKLKIKR LENTSGRQVT YSKRRAGILK KAKELSILCD IDIILLMFSP TGKPTICLGE 60 RSNIEDVVAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSS AQTVEILTLL 120 LAQEFMNHSR LLQAQISEVQ KRLSYWSEPE KINSIDHIRA MEESLKHSLN QVQLHKENLG 180 KQLMSLECAS QFQNGIHLPL EIGGEQQSSN ISWLHDNEGQ PMMLPEESNL PPQRECSTEV 240 SLQGFPGYFS TGKETEADGQ INDDTLDQLG QNACLGLQLA GHYPYRSYGL NLLHEKEFKP 300 QAEVNLQEAT VEYQMNSFEP PRPRYDASIQ TWASTSGSCG VTVFSNHSYR QQPTGLHDS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGRVKLKIKR LENTSGRQVT YSKRRAGILK KAKELSILCD IDIILLMFSP TGKPTICLGE  60
RSNIEDVVAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLGSS AQTVEILTLL  120
LAQEFMNHSR LLQAQISEVQ KRLSYWSEPE KINSIDHIRA MEESLKHSLN QVQLHKENLG  180
KQLMSLECAS QFQNGIHLPL EIGGEQQSSN ISWLHDNEGQ PMMLPEESNL PPQRECSTEV  240
SLQGFPGYFS TGKETEADGQ INDDTLDQLG QNACLGLQLA GHYPYRSYGL NLLHEKEFKP  300
QAEVNLQEAT VEYQMNSFEP PRPRYDASIQ TWASTSGSCG VTVFSNHSYR QQPTGLHDS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939816.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q1PFA4	5e-92	AGL30_ARATH; Agamous-like MADS-box protein AGL30
Swissprot	Q7X9I0	6e-92	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2H3YRH8	0.0	A0A2H3YRH8_PHODC; agamous-like MADS-box protein AGL65 isoform X1
STRING	XP_008802579.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4626	36	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	3e-83	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]