PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939813.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 483aa MW: 52527.9 Da PI: 6.2003

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939813.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.6e-39	129	189	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s +tkfCyynny+++qPr+fC++C+ryWt+GG++rnvPvG+grrknk+s XP_010939813.1 129 PDKILPCPRCNSLDTKFCYYNNYNVNQPRHFCRNCQRYWTAGGTMRNVPVGAGRRKNKNSM 189 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	127	186	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-32	131	187	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	133	187	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	135	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MKAEESGRQR EQQNRETGEM ADSRDPAIKL FGKTIPLPAG GEAPAVSGDD EREKDEAKGS 60 SDEEATHEST DMDHDSPNSE DKSGSPISST ANETPKNSAD QETIPVKNLK PEEQKNEVNT 120 SQERTKKKPD KILPCPRCNS LDTKFCYYNN YNVNQPRHFC RNCQRYWTAG GTMRNVPVGA 180 GRRKNKNSMS QFRRITLSDA AFQTAGPEVP EPIHHTPQKP NGTVLSFGSD TPLCESMASV 240 LNLAEKTGNN CNRNGFHRPE EQMIPFPAVE NCDEHSTGSS VTASNSTDDG SGANMQEPVI 300 QDCQGFPSRI PYINGSPWPY LWSPVPAFCP SSFPVSFHPA PAYWGCPVAG TWSIPWLLPL 360 ASSDNGSSGS GPNSPTLGKH SREGELLSHT NSEKGGSPKQ SKQEGCLWIP KTLRIDDPEE 420 AAKSSIWATL GFKHDTANGV SGGGLFKAFQ KKVEVKNHTA ETSPALHANP AALSRSLNFQ 480 ESS

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MKAEESGRQR EQQNRETGEM ADSRDPAIKL FGKTIPLPAG GEAPAVSGDD EREKDEAKGS  60
SDEEATHEST DMDHDSPNSE DKSGSPISST ANETPKNSAD QETIPVKNLK PEEQKNEVNT  120
SQERTKKKPD KILPCPRCNS LDTKFCYYNN YNVNQPRHFC RNCQRYWTAG GTMRNVPVGA  180
GRRKNKNSMS QFRRITLSDA AFQTAGPEVP EPIHHTPQKP NGTVLSFGSD TPLCESMASV  240
LNLAEKTGNN CNRNGFHRPE EQMIPFPAVE NCDEHSTGSS VTASNSTDDG SGANMQEPVI  300
QDCQGFPSRI PYINGSPWPY LWSPVPAFCP SSFPVSFHPA PAYWGCPVAG TWSIPWLLPL  360
ASSDNGSSGS GPNSPTLGKH SREGELLSHT NSEKGGSPKQ SKQEGCLWIP KTLRIDDPEE  420
AAKSSIWATL GFKHDTANGV SGGGLFKAFQ KKVEVKNHTA ETSPALHANP AALSRSLNFQ  480
ESS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939813.1	0.0	cyclic dof factor 3
TrEMBL	A0A2H3YR47	0.0	A0A2H3YR47_PHODC; cyclic dof factor 3-like
STRING	XP_008802580.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	4e-93	cycling DOF factor 3