PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | G2-like | ||||||||
Protein Properties | Length: 301aa MW: 33187.2 Da PI: 6.718 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.8 | 8.8e-32 | 17 | 71 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rFv+av+qLGG++kAtPk+++++m+v+g+tl+h+kSHLQkYRl XP_010939808.1 17 KPRLKWTQQLHQRFVDAVSQLGGADKATPKSLMRAMGVPGVTLYHLKSHLQKYRL 71 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 15 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-16 | 16 | 74 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-22 | 17 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-6 | 19 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.7E-19 | 117 | 158 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MPNQGENRGL VLSVDAKPRL KWTQQLHQRF VDAVSQLGGA DKATPKSLMR AMGVPGVTLY 60 HLKSHLQKYR LAKNRNTNTP NENKIQDCVA ASNLTIDNEA SQIDQEKTPA RLNETMVQMQ 120 IEVQRKLQEQ IEVQRHLQLR IEAQGKYLQS VLRKAQETLA GYSSNSLGME AAKAELSELV 180 SAVETECLSS SFSQGSLIPK RAEHADCSTD SCLTSSLERQ EAKVGKQHKL EHSSSLDNWS 240 EGSDEINPNG MKAMETQVND MLGMEKGSCS SIHGEANVEQ PTSGKQETSG FGVPRGLDLN 300 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-18 | 16 | 75 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939806.1 | 0.0 | myb family transcription factor PHL8 isoform X1 | ||||
Swissprot | Q9SQQ9 | 3e-70 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A2H3YRW0 | 0.0 | A0A2H3YRW0_PHODC; myb-related protein 2-like isoform X5 | ||||
STRING | XP_008802581.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-72 | G2-like family protein |
Publications ? help Back to Top | |||
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