PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939806.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family G2-like
Protein Properties Length: 306aa    MW: 33719.8 Da    PI: 6.5156
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939806.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.89e-322276155
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    kprl+Wt++LH+rFv+av+qLGG++kAtPk+++++m+v+g+tl+h+kSHLQkYRl
  XP_010939806.1 22 KPRLKWTQQLHQRFVDAVSQLGGADKATPKSLMRAMGVPGVTLYHLKSHLQKYRL 76
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-302080IPR009057Homeodomain-like
SuperFamilySSF466894.84E-162179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-222277IPR006447Myb domain, plants
PfamPF002491.9E-62475IPR001005SANT/Myb domain
PfamPF143794.8E-19122163IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGSQEMPNQG ENRGLVLSVD AKPRLKWTQQ LHQRFVDAVS QLGGADKATP KSLMRAMGVP  60
GVTLYHLKSH LQKYRLAKNR NTNTPNENKI QDCVAASNLT IDNEASQIDQ EKTPARLNET  120
MVQMQIEVQR KLQEQIEVQR HLQLRIEAQG KYLQSVLRKA QETLAGYSSN SLGMEAAKAE  180
LSELVSAVET ECLSSSFSQG SLIPKRAEHA DCSTDSCLTS SLERQEAKVG KQHKLEHSSS  240
LDNWSEGSDE INPNGMKAME TQVNDMLGME KGSCSSIHGE ANVEQPTSGK QETSGFGVPR  300
GLDLNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-182180160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939806.10.0myb family transcription factor PHL8 isoform X1
SwissprotQ9SQQ93e-70PHL9_ARATH; Myb-related protein 2
TrEMBLA0A2H3ZVM70.0A0A2H3ZVM7_PHODC; myb-related protein 2-like isoform X2
STRINGXP_008802581.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-72G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]