PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939774.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 337aa    MW: 37709.9 Da    PI: 6.4352
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939774.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.92.6e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l  +s
  XP_010939774.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58
                    79********************************************9997 PP

2K-box21.41e-08110178977
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                     + +++ e+lqqe+ + + +++  ++ +R +  + L+  s+ eL++ e+ L ++l+++ ++K+ ll +++
  XP_010939774.1 110 AVNSQVEELQQEIHRFQHQLQLSEERLRFFEPDPLSITSMDELESCEKFLMEALRRVAERKKYLLSNHL 178
                     567889**********************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.899161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-30278IPR002100Transcription factor, MADS-box
CDDcd002651.59E-36270No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-26323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-263859IPR002100Transcription factor, MADS-box
PfamPF014867.8E-6113179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGR  60
RRIEDVLARY ISLPEHDRGG VIQNRDYLIR TLKMLKCESD MAAELVNPGA VNSQVEELQQ  120
EIHRFQHQLQ LSEERLRFFE PDPLSITSMD ELESCEKFLM EALRRVAERK KYLLSNHLPS  180
YDPSTSSMQM YLQSQQEPMP NAFGSEVVQW VPGTTPNPGH PIFIGSDPLM SLRDPGIYGP  240
ISSGAGLPVD TRLGSCHISN QNDTWHQAYT STELLSALIP SAPFPLIQHP MAPTDLSPMV  300
PPAEQAKAQA SCPHMPGDEH GTCATTYENN PSSVNVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-18175174Myocyte-specific enhancer factor 2B
1tqe_Q5e-18175174Myocyte-specific enhancer factor 2B
1tqe_R5e-18175174Myocyte-specific enhancer factor 2B
1tqe_S5e-18175174Myocyte-specific enhancer factor 2B
6bz1_A6e-18193189MEF2 CHIMERA
6bz1_B6e-18193189MEF2 CHIMERA
6bz1_C6e-18193189MEF2 CHIMERA
6bz1_D6e-18193189MEF2 CHIMERA
6c9l_A5e-18175174Myocyte-specific enhancer factor 2B
6c9l_B5e-18175174Myocyte-specific enhancer factor 2B
6c9l_C5e-18175174Myocyte-specific enhancer factor 2B
6c9l_D5e-18175174Myocyte-specific enhancer factor 2B
6c9l_E5e-18175174Myocyte-specific enhancer factor 2B
6c9l_F5e-18175174Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939774.10.0agamous-like MADS-box protein AGL66
SwissprotQ1PFC22e-85AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A2H3XYR30.0A0A2H3XYR3_PHODC; agamous-like MADS-box protein AGL66 isoform X1
STRINGXP_008790798.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.18e-88AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]