PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 337aa MW: 37709.9 Da PI: 6.4352 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.9 | 2.6e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s XP_010939774.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP | |||||||
2 | K-box | 21.4 | 1e-08 | 110 | 178 | 9 | 77 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 + +++ e+lqqe+ + + +++ ++ +R + + L+ s+ eL++ e+ L ++l+++ ++K+ ll +++ XP_010939774.1 110 AVNSQVEELQQEIHRFQHQLQLSEERLRFFEPDPLSITSMDELESCEKFLMEALRRVAERKKYLLSNHL 178 567889**********************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.5E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.899 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-30 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.59E-36 | 2 | 70 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.8E-6 | 113 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGR 60 RRIEDVLARY ISLPEHDRGG VIQNRDYLIR TLKMLKCESD MAAELVNPGA VNSQVEELQQ 120 EIHRFQHQLQ LSEERLRFFE PDPLSITSMD ELESCEKFLM EALRRVAERK KYLLSNHLPS 180 YDPSTSSMQM YLQSQQEPMP NAFGSEVVQW VPGTTPNPGH PIFIGSDPLM SLRDPGIYGP 240 ISSGAGLPVD TRLGSCHISN QNDTWHQAYT STELLSALIP SAPFPLIQHP MAPTDLSPMV 300 PPAEQAKAQA SCPHMPGDEH GTCATTYENN PSSVNVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6bz1_A | 6e-18 | 1 | 93 | 1 | 89 | MEF2 CHIMERA |
6bz1_B | 6e-18 | 1 | 93 | 1 | 89 | MEF2 CHIMERA |
6bz1_C | 6e-18 | 1 | 93 | 1 | 89 | MEF2 CHIMERA |
6bz1_D | 6e-18 | 1 | 93 | 1 | 89 | MEF2 CHIMERA |
6c9l_A | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939774.1 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
Swissprot | Q1PFC2 | 2e-85 | AGL66_ARATH; Agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A2H3XYR3 | 0.0 | A0A2H3XYR3_PHODC; agamous-like MADS-box protein AGL66 isoform X1 | ||||
STRING | XP_008790798.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4953 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 8e-88 | AGAMOUS-like 66 |
Publications ? help Back to Top | |||
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