PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939597.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 382aa MW: 42698.4 Da PI: 9.1764

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939597.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.6e-11	92	134	2	41
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 +++k+ rr+++NReAAr+sR+RKka++++Le k ++Le+e XP_010939597.1 92 PADKVVRRLAQNREAARKSRLRKKAYVQQLESsriKLAQLEQE 134 6799**************************9722244555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-7	88	140	No hit	No description
SMART	SM00338	4.0E-7	91	154	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.91	93	137	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.7E-8	93	131	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-7	95	136	No hit	No description
PROSITE pattern	PS00036	0	98	113	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.9E-31	182	256	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MQRGPARALH VNSSPDSMSS TSAHFATSRR MAVYQPNHQI SMWGNSFKAD ISQNTGASTI 60 VEADTKLDNR LEDIPRESLG PSKRYDQEAN KPADKVVRRL AQNREAARKS RLRKKAYVQQ 120 LESSRIKLAQ LEQELERARQ QGVYIGGHLG DATLGLPGTV NSGVAAFEME YGHWVEEQNR 180 QTRELRAALQ AHVSDIELHM LVESGMSHYD DLFRIKAIAA KSDVFYLMSG MWKTAVERFF 240 LWIGGFRPSE LLKVLTSQLD PLTEQQLVAV HNLQLSSQQA EYALSQGMDR LQQTIVETLA 300 SDLLGASGAA NCMGQMANAM GELEALVSFV NQADHLRQQA LQQMYKILTT RQAARALLAL 360 GDYFQRLRAL SSLWAARPRE PA

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MQRGPARALH VNSSPDSMSS TSAHFATSRR MAVYQPNHQI SMWGNSFKAD ISQNTGASTI  60
VEADTKLDNR LEDIPRESLG PSKRYDQEAN KPADKVVRRL AQNREAARKS RLRKKAYVQQ  120
LESSRIKLAQ LEQELERARQ QGVYIGGHLG DATLGLPGTV NSGVAAFEME YGHWVEEQNR  180
QTRELRAALQ AHVSDIELHM LVESGMSHYD DLFRIKAIAA KSDVFYLMSG MWKTAVERFF  240
LWIGGFRPSE LLKVLTSQLD PLTEQQLVAV HNLQLSSQQA EYALSQGMDR LQQTIVETLA  300
SDLLGASGAA NCMGQMANAM GELEALVSFV NQADHLRQQA LQQMYKILTT RQAARALLAL  360
GDYFQRLRAL SSLWAARPRE PA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939597.1	0.0	transcription factor TGA1-like isoform X1
Swissprot	Q39237	1e-160	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2H3YN86	0.0	A0A2H3YN86_PHODC; transcription factor TGA4-like isoform X1
TrEMBL	A0A2H3YW29	0.0	A0A2H3YW29_PHODC; transcription factor TGA2.2-like isoform X1
STRING	XP_008801018.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-136	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]