PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 380aa MW: 39478.4 Da PI: 8.1707 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.1 | 9e-40 | 64 | 220 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_010939521.1 64 PPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISVPsrlhany 158 789******************************************************************99976777777766333335556666 PP TCP 89 .............................................................k 89 + XP_010939521.1 159 fssatgltppplriggsgfppegpsssssslllnfnsgscigadtpsdadiggnmrkrrweQ 220 66666666777666666666666655555555555555555555555555555555555541 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.1E-40 | 69 | 234 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.869 | 70 | 124 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MEGDATGGSR RPNFPLQLLE KKEEDSCSSS GYPSLAISSD PSTAAGGSGS GGHELATDPL 60 RKAPPKRSST KDRHTKVEGR GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA 120 VIAATGTGTI PANFTSLNIS LRSSGSSISV PSRLHANYFS SATGLTPPPL RIGGSGFPPE 180 GPSSSSSSLL LNFNSGSCIG ADTPSDADIG GNMRKRRWEQ ELQQHHHHLP QQQQQQPLQH 240 QMASYSQASH GQIPGTLWMV TNPNSQSXAS GESIWTFPQM GSTTMFRGSM SSGLHFMNIP 300 TPMALLPGQQ LGLGSGSGGG GGGGGGGGGG GGSGEGHMGI LAALNAYRLP PSASDQVQTR 360 SQQAHGGGDG RHDTMSTSES |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 316 | 332 | SGGGGGGGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029124259.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor TCP15-like | ||||
Swissprot | Q93Z00 | 1e-49 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | A0A2H3Z366 | 1e-180 | A0A2H3Z366_PHODC; transcription factor TCP15-like | ||||
STRING | XP_008807718.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 6e-48 | TCP family protein |
Publications ? help Back to Top | |||
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