PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 416aa MW: 45009.8 Da PI: 4.5271 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.3 | 1.9e-18 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+tae+Aa+a+++a+ l+g XP_010939476.1 40 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEDAARAYDEAACILRG 89 789******.7*********33....35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.35E-30 | 39 | 96 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-27 | 40 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 40 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.309 | 40 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-34 | 40 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-19 | 40 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MVRKRKCADE ANDGEPPSSS WEEVAAAAAA LGGARRARKR FVGVRQRPSG RWVAEIKDTI 60 QKIRVWLGTF DTAEDAARAY DEAACILRGA NTRTNFWPCS PSQPAGPPAL PSKITNLLLT 120 RLRARNNSGF AESQQQAVQQ LQPVQQQLYG TTANEGGDIQ FTDFINDPTE SMSNLTHCSD 180 GGGDHMCHYL ENWGDQGGVG EGELGLGYNY LEEVGHFGEC GEGVHQEEGD GEMGMMDFQF 240 MDAVEGSSSS FFSPFEMVEE IEEPIEQESG EDEPSMIRAA MKRMKYERKV SASLYALNGI 300 SECLRLKLGG RNGGELMANH LSSLRNACRK QKQEEVVKVV DGGSVQVPVE NPHIQSQSES 360 TSSSLLCSSS SPISSSSSSS SPPPPQPPPS SASTLSNDGE SSLWSSLDLP PICYVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939476.1 | 0.0 | uncharacterized protein LOC105058290 | ||||
TrEMBL | A0A2H3XAR3 | 0.0 | A0A2H3XAR3_PHODC; ethylene-responsive transcription factor ERN1-like | ||||
STRING | XP_008781042.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 7e-21 | related to AP2 11 |