PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939472.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 317aa    MW: 35244.7 Da    PI: 8.2671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939472.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q+G+  +W + ++++g++R++k+c++rw++yl
   XP_010939472.1 14 KGPWSPEEDAKLKSYIQQHGTVgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79******************879************************97 PP
2Myb_DNA-binding36.98.2e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_010939472.1  69 GGFSEEEDNIICSLYVAIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.374962IPR017930Myb domain
SuperFamilySSF466894.59E-2612109IPR009057Homeodomain-like
SMARTSM007172.6E-121364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-251569IPR009057Homeodomain-like
CDDcd001674.50E-101662No hitNo description
PROSITE profilePS5129421.05763117IPR017930Myb domain
SMARTSM007176.3E-1167115IPR001005SANT/Myb domain
PfamPF002491.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2370117IPR009057Homeodomain-like
CDDcd001678.45E-871111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRAPCCDKE TVKKGPWSPE EDAKLKSYIQ QHGTVGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYVAIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QHKNQQQAHR VCHKNQETKE SKDGSSFWAT PPNIPTNQFK YQVDHHVGDG HASIRKFSMN  180
VDGRFSCNYD AGRETPLASF LEQQHLHRSS TGSIELSEQV NSFINGCSPS GYHILQGPNG  240
IPVELDEMFC GNSVKSVGLD GFIGVGNMVG ESNGTSTSGS MNWNEVSPLI YPPVVSSYQG  300
MQQQCLPDEL VHLLGAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939472.20.0transcription factor RAX3-like
SwissprotQ9M2Y91e-78RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A2H3XMB30.0A0A2H3XMB3_PHODC; transcription repressor MYB5
STRINGXP_008785764.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-73myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]