PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939470.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21188.6 Da    PI: 9.8678
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939470.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.4e-241563149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krien+  rqvtfskRr+g++KKA+ELS+LC+a+v ++++s+ g+ y +
  XP_010939470.1 15 KRIENEQIRQVTFSKRRQGLFKKASELSTLCGAQVGILVYSPAGRPYSF 63
                    79******************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.89767IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-32766IPR002100Transcription factor, MADS-box
CDDcd001209.07E-32866No hitNo description
SuperFamilySSF554553.01E-25874IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-20929IPR002100Transcription factor, MADS-box
PfamPF003198.0E-261663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-202944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-204465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MVRKTSNGHR KIEIKRIENE QIRQVTFSKR RQGLFKKASE LSTLCGAQVG ILVYSPAGRP  60
YSFGQPGFEV VSNQLIAHNS FMTSPNPIEG PQGNAIVQQL NCHCMEIMSL LDTAKTKGAV  120
LKERLEITPK GKEKAFETEL EGFGMDELER LVKSYNDLKL KADSRIYKIM SGGASSSGGP  180
LPVNPVSMLT LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A7e-165741083PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B7e-165741083PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939470.11e-141agamous-like MADS-box protein AGL62
TrEMBLA0A2H3XLW51e-105A0A2H3XLW5_PHODC; agamous-like MADS-box protein AGL29
STRINGXP_008785760.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3755123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-29AGAMOUS-like 62