PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010939362.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

GRF

Protein Properties

Length: 604aa MW: 65299.7 Da PI: 7.8585

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939362.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.6	2.2e-23	224	268	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_010939362.1 224 DSEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 268 689***************************************985 PP
2	QLQ	53.2	8.9e-19	155	191	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++ an+P+P+ Ll i++ XP_010939362.1 155 GPFTPSQWMELEQQALIYKHIDANVPIPHSLLISIRR 191 59******************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.7E-11	155	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.13	156	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.1E-13	156	189	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.719	224	268	IPR014977	WRC domain
Pfam	PF08879	7.7E-20	226	267	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MDLGGVVGME GVVSAASSEF GGLFSSPPVS SHSELKQRGV SCSGGRSGGF EENEWRFSKM 60 ARTEAMLAPS ITRGADPLHR SNSHSLFPEG GQMLSFSSSP SSKPDALALT SDGTLPYYHH 120 PSSSSSTPSY LRNAGLGSGC VNVNMDGVFL SRVRGPFTPS QWMELEQQAL IYKHIDANVP 180 IPHSLLISIR RSLKPGFSPI SAGSFGSSAL GWGSFHLGYS GNVDSEPGRC RRTDGKKWRC 240 SRDAVADQKY CERHMNRGRH RSRKHVEGHT GHAAKAIPII PTSQSASAVS AGRSSSSLTI 300 MQQQTKNLQS NATDPCPAQL NRMLISKENV NDHVQDSQDL STLNSMNSKP MNTLFPISKQ 360 QDPFEVDSSQ GDFGHITTEI ILNPSRSSTQ KFSFIPTPKL SDQRPKCHPL RHFVDDWPKN 420 QSDRSTIMWP DVEEMQSDRT QLSISIPMAS SAFSSSSSSP NHEKLTLSPL KLSRDFDPIH 480 MGLGVGGVLN EVTQRQASWT PISWEASMAG PLGEALTNAS STPKDQSKNC SSSSLNLLTD 540 GWDSSPWLES SPTGVLQKTN FRSLSSSTGS SPRAESHKTH NSTGSLCDDL LGSNLLDPPN 600 IPSL

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MDLGGVVGME GVVSAASSEF GGLFSSPPVS SHSELKQRGV SCSGGRSGGF EENEWRFSKM  60
ARTEAMLAPS ITRGADPLHR SNSHSLFPEG GQMLSFSSSP SSKPDALALT SDGTLPYYHH  120
PSSSSSTPSY LRNAGLGSGC VNVNMDGVFL SRVRGPFTPS QWMELEQQAL IYKHIDANVP  180
IPHSLLISIR RSLKPGFSPI SAGSFGSSAL GWGSFHLGYS GNVDSEPGRC RRTDGKKWRC  240
SRDAVADQKY CERHMNRGRH RSRKHVEGHT GHAAKAIPII PTSQSASAVS AGRSSSSLTI  300
MQQQTKNLQS NATDPCPAQL NRMLISKENV NDHVQDSQDL STLNSMNSKP MNTLFPISKQ  360
QDPFEVDSSQ GDFGHITTEI ILNPSRSSTQ KFSFIPTPKL SDQRPKCHPL RHFVDDWPKN  420
QSDRSTIMWP DVEEMQSDRT QLSISIPMAS SAFSSSSSSP NHEKLTLSPL KLSRDFDPIH  480
MGLGVGGVLN EVTQRQASWT PISWEASMAG PLGEALTNAS STPKDQSKNC SSSSLNLLTD  540
GWDSSPWLES SPTGVLQKTN FRSLSSSTGS SPRAESHKTH NSTGSLCDDL LGSNLLDPPN  600
IPSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939362.1	0.0	growth-regulating factor 6
Swissprot	Q6AWY3	1e-145	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2H3XM02	0.0	A0A2H3XM02_PHODC; growth-regulating factor 6-like
STRING	XP_008785737.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-72	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]