PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939352.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 417aa    MW: 46475.1 Da    PI: 6.747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939352.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-10202250355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_010939352.1 202 NSHSLAERVRREKISERMRLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 250
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17197267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.74E-11197254No hitNo description
PROSITE profilePS5088815.51199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16199266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-7202250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-10205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGTSSMTTPR SSANVTEQYL VTDWNSLVSV DQNMDFSGPS SISSYNVRVP QNQEFNCSIA  60
DTRPSSFGNE SFPEMVSSFD LSESCKVADA VCPPSFPSTN KHSFEKNLKG KKRKSLTECG  120
AVHPHSSLER IQKAGVEQQK DLSPESAKSP TERDEKKQKS ELNPGVTSHK QAAKLAKEHS  180
QDDDALKEDY IHVRAKRGQA TNSHSLAERV RREKISERMR LLQDLVPGCN KITGKAVMLD  240
EIINYVQSLQ RQVEFLSMKL ATVSPELNFD LEQILSKDIF HAQDGGSAVL GFGPRMSSLR  300
PHLYGPSPHG VMQSEIMCSV PHSEDMVRAA PPHTSPVAQI SSVWHDELQN VVQMGFVPNA  360
AVTDTENNDC CTSKDSWPSG AEERRVVQFQ RPNHFSSFFR RIYEVFMMIL YSLSSNS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019710637.10.0transcription factor bHLH74 isoform X1
RefseqXP_029124235.10.0transcription factor bHLH74 isoform X1
SwissprotQ9CAA96e-59BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3Q0HXH40.0A0A3Q0HXH4_PHODC; transcription factor bHLH74-like
STRINGXP_008785728.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]