PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939327.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TALE | ||||||||
Protein Properties | Length: 351aa MW: 39526.4 Da PI: 7.4016 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 277 | 311 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+++gL+++q+ +WF N+R ++ XP_010939327.1 277 KWPYPSEAEKVALAESTGLDQKQINNWFINQRKRH 311 669*****************************885 PP | |||||||
2 | ELK | 36.7 | 8.9e-13 | 231 | 252 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sL+qE++ XP_010939327.1 231 ELKRHLLKKYSGYLSSLRQELC 252 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.7E-22 | 88 | 132 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.1E-22 | 89 | 130 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.2E-28 | 139 | 190 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.9E-24 | 144 | 189 | IPR005541 | KNOX2 |
SMART | SM01188 | 9.5E-7 | 231 | 252 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.47 | 231 | 251 | IPR005539 | ELK domain |
Pfam | PF03789 | 7.5E-10 | 231 | 252 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.406 | 251 | 314 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-13 | 253 | 318 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-19 | 253 | 327 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 256 | 316 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.53E-12 | 263 | 315 | No hit | No description |
Pfam | PF05920 | 5.5E-17 | 271 | 310 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 289 | 312 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEELSHLGDN PRGGGFRYAS SSVATASNTT TTTTPITGVV APPTSASVPI YCGPNLNAST 60 LPRFHPPKPE ASSSSSHRYP FARPTDVDAM KARIISHPHY SNLLKAYMDC QKVGAPPEVA 120 DRLSAVASDF EARQRAGIRC RDPPADPELD QFMEAYYHML VKYREELTRP LQEATDFLRR 180 VESQLNSLTN GSFRILSSDD KHGVCSSEDD QGGSGEETEL PEIDPRAEDA ELKRHLLKKY 240 SGYLSSLRQE LCKKKKKGKL PKEARQKLLG WWELHYKWPY PSEAEKVALA ESTGLDQKQI 300 NNWFINQRKR HWKPSEDMQF VVMDGYHHPQ NAAALYMDGH FMGDGLYRLG Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939327.1 | 0.0 | homeotic protein knotted-1 | ||||
Swissprot | Q41330 | 1e-139 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | A0A2H3XLY3 | 0.0 | A0A2H3XLY3_PHODC; homeotic protein knotted-1-like | ||||
STRING | XP_008785712.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9886 | 31 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-120 | KNOTTED-like from Arabidopsis thaliana |