PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939327.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TALE
Protein Properties Length: 351aa    MW: 39526.4 Da    PI: 7.4016
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939327.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-092773112155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++e+  LA+++gL+++q+ +WF N+R ++
  XP_010939327.1 277 KWPYPSEAEKVALAESTGLDQKQINNWFINQRKRH 311
                     669*****************************885 PP

2ELK36.78.9e-13231252122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KYsgyL+sL+qE++
  XP_010939327.1 231 ELKRHLLKKYSGYLSSLRQELC 252
                     9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.7E-2288132IPR005540KNOX1
PfamPF037902.1E-2289130IPR005540KNOX1
SMARTSM012561.2E-28139190IPR005541KNOX2
PfamPF037913.9E-24144189IPR005541KNOX2
SMARTSM011889.5E-7231252IPR005539ELK domain
PROSITE profilePS5121311.47231251IPR005539ELK domain
PfamPF037897.5E-10231252IPR005539ELK domain
PROSITE profilePS5007112.406251314IPR001356Homeobox domain
SMARTSM003893.0E-13253318IPR001356Homeobox domain
SuperFamilySSF466891.54E-19253327IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27256316IPR009057Homeodomain-like
CDDcd000861.53E-12263315No hitNo description
PfamPF059205.5E-17271310IPR008422Homeobox KN domain
PROSITE patternPS000270289312IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEELSHLGDN PRGGGFRYAS SSVATASNTT TTTTPITGVV APPTSASVPI YCGPNLNAST  60
LPRFHPPKPE ASSSSSHRYP FARPTDVDAM KARIISHPHY SNLLKAYMDC QKVGAPPEVA  120
DRLSAVASDF EARQRAGIRC RDPPADPELD QFMEAYYHML VKYREELTRP LQEATDFLRR  180
VESQLNSLTN GSFRILSSDD KHGVCSSEDD QGGSGEETEL PEIDPRAEDA ELKRHLLKKY  240
SGYLSSLRQE LCKKKKKGKL PKEARQKLLG WWELHYKWPY PSEAEKVALA ESTGLDQKQI  300
NNWFINQRKR HWKPSEDMQF VVMDGYHHPQ NAAALYMDGH FMGDGLYRLG Q
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939327.10.0homeotic protein knotted-1
SwissprotQ413301e-139KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2H3XLY30.0A0A2H3XLY3_PHODC; homeotic protein knotted-1-like
STRINGXP_008785712.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98863145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-120KNOTTED-like from Arabidopsis thaliana