PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939217.1 | ||||||||
Common Name | SQUA3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26847.6 Da PI: 10.1472 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr g+lKKA+E+SvLCdaevav++fs++gklyeys+ XP_010939217.1 9 KRIENEINRQVTFSKRRSGLLKKAHEISVLCDAEVAVVVFSTKGKLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 98.6 | 9.4e-33 | 89 | 173 | 15 | 99 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 s+ +e+ Lk+++e Lq+ qRhl+Ge+L+sL lkeLqqLeq+Le++l++iRs+Kn+ll+++i el++kek+lqe+n L+k++ XP_010939217.1 89 GSWLHEFGELKSKVEALQKCQRHLMGEQLDSLALKELQQLEQRLESALRHIRSRKNQLLFDSIAELRRKEKSLQEQNCILEKRIV 173 57999***************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.436 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-34 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.80E-41 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 4.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.439 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.6E-28 | 90 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MGRGRVQLKR IENEINRQVT FSKRRSGLLK KAHEISVLCD AEVAVVVFST KGKLYEYSTD 60 SSMEKILERY RQYSNAEKAL AQGDPWPQGS WLHEFGELKS KVEALQKCQR HLMGEQLDSL 120 ALKELQQLEQ RLESALRHIR SRKNQLLFDS IAELRRKEKS LQEQNCILEK RIVESSARAQ 180 NEHPHCERQS QPRTSSSSPL PFLVTDSFPT LHVRSNQARG TSLPAWMLRH VSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-23 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 5e-23 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 5e-23 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 5e-23 | 1 | 84 | 1 | 83 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939217.1 | 1e-172 | truncated transcription factor CAULIFLOWER A isoform X2 | ||||
Swissprot | Q6E6S7 | 1e-88 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | Q5K6A6 | 1e-167 | Q5K6A6_ELAGV; MADS box transcription factor | ||||
STRING | XP_008785630.1 | 1e-112 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 6e-68 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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