PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939217.1
Common NameSQUA3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26847.6 Da    PI: 10.1472
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939217.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.2e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtfskRr g+lKKA+E+SvLCdaevav++fs++gklyeys+
  XP_010939217.1  9 KRIENEINRQVTFSKRRSGLLKKAHEISVLCDAEVAVVVFSTKGKLYEYST 59
                    79***********************************************96 PP

2K-box98.69.4e-33891731599
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      s+ +e+  Lk+++e Lq+ qRhl+Ge+L+sL lkeLqqLeq+Le++l++iRs+Kn+ll+++i el++kek+lqe+n  L+k++ 
  XP_010939217.1  89 GSWLHEFGELKSKVEALQKCQRHLMGEQLDSLALKELQQLEQRLESALRHIRSRKNQLLFDSIAELRRKEKSLQEQNCILEKRIV 173
                     57999***************************************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.436161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-34286IPR002100Transcription factor, MADS-box
CDDcd002651.80E-41276No hitNo description
PRINTSPR004044.6E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.43988178IPR002487Transcription factor, K-box
PfamPF014861.6E-2890172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGRVQLKR IENEINRQVT FSKRRSGLLK KAHEISVLCD AEVAVVVFST KGKLYEYSTD  60
SSMEKILERY RQYSNAEKAL AQGDPWPQGS WLHEFGELKS KVEALQKCQR HLMGEQLDSL  120
ALKELQQLEQ RLESALRHIR SRKNQLLFDS IAELRRKEKS LQEQNCILEK RIVESSARAQ  180
NEHPHCERQS QPRTSSSSPL PFLVTDSFPT LHVRSNQARG TSLPAWMLRH VSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-23184183MEF2 CHIMERA
6byy_B5e-23184183MEF2 CHIMERA
6byy_C5e-23184183MEF2 CHIMERA
6byy_D5e-23184183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939217.11e-172truncated transcription factor CAULIFLOWER A isoform X2
SwissprotQ6E6S71e-88AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLQ5K6A61e-167Q5K6A6_ELAGV; MADS box transcription factor
STRINGXP_008785630.11e-112(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Adam H, et al.
    MADS box genes in oil palm (Elaeis guineensis): patterns in the evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA subfamilies.
    J. Mol. Evol., 2006. 62(1): p. 15-31
    [PMID:16320117]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]