PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | TCP | ||||||||
Protein Properties | Length: 347aa MW: 39090 Da PI: 8.4661 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.1 | 2.8e-29 | 70 | 179 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 g+kdrhsk+ T +g+RdRRvRls++ a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++ +++ + + s+s ++s++ ++ XP_010939190.1 70 GGKDRHSKVRTIKGLRDRRVRLSVPAAIQLYDLQDKLGLNQPSKVVDWLLNAAQHEIDKLPPLQLPPEFFI-QFSQSMATSHKLAPnkapsflpf 163 78*************************************************************88888555.33333333322222233445555 PP TCP 89 ...............k 89 + XP_010939190.1 164 rdgaelvyddrarqlA 179 5555555444444331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.596 | 71 | 129 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.4E-28 | 71 | 201 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MIFALTGNPQ LQLTNCLQSD ESITMIRDSR EEELLTKQGG GTNDDRFAVS SRLWSALKNP 60 RIVRVSRTFG GKDRHSKVRT IKGLRDRRVR LSVPAAIQLY DLQDKLGLNQ PSKVVDWLLN 120 AAQHEIDKLP PLQLPPEFFI QFSQSMATSH KLAPNKAPSF LPFRDGAELV YDDRARQLAS 180 SSTMANGDML DNNTGANEMM VQKSTFWSSN VLMKNKEKAT MKEPNIDKGS MIKGNDVGSD 240 GMQNNAMYTS YHHWNPPNEH ISHLGSHLPQ EEELHNYQPG SMFAAYMNAS TDFAKQYHHL 300 DMANSASKFL PSTSLRNSLQ FTGDPSLKLL QPNFGFKHHH PQDHQEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 76 | 130 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 76 | 130 | 1 | 55 | Putative transcription factor PCF6 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939190.1 | 0.0 | transcription factor TCP13 isoform X2 | ||||
TrEMBL | A0A2H3XZZ9 | 0.0 | A0A2H3XZZ9_PHODC; transcription factor TCP13-like | ||||
STRING | XP_008791353.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 1e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |