PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939189.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family TCP
Protein Properties Length: 349aa    MW: 39319.3 Da    PI: 8.873
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939189.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.12.8e-2972181389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                     g+kdrhsk+ T +g+RdRRvRls++ a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++ +++ +  + s+s ++s++ ++         
  XP_010939189.1  72 GGKDRHSKVRTIKGLRDRRVRLSVPAAIQLYDLQDKLGLNQPSKVVDWLLNAAQHEIDKLPPLQLPPEFFI-QFSQSMATSHKLAPnkapsflpf 165
                     78*************************************************************88888555.33333333322222233445555 PP

             TCP  89 ...............k 89 
                                    +
  XP_010939189.1 166 rdgaelvyddrarqlA 181
                     5555555444444331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.59673131IPR017887Transcription factor TCP subgroup
PfamPF036344.5E-2873203IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMKSPPYAGN PQLQLTNCLQ SDESITMIRD SREEELLTKQ GGGTNDDRFA VSSRLWSALK  60
NPRIVRVSRT FGGKDRHSKV RTIKGLRDRR VRLSVPAAIQ LYDLQDKLGL NQPSKVVDWL  120
LNAAQHEIDK LPPLQLPPEF FIQFSQSMAT SHKLAPNKAP SFLPFRDGAE LVYDDRARQL  180
ASSSTMANGD MLDNNTGANE MMVQKSTFWS SNVLMKNKEK ATMKEPNIDK GSMIKGNDVG  240
SDGMQNNAMY TSYHHWNPPN EHISHLGSHL PQEEELHNYQ PGSMFAAYMN ASTDFAKQYH  300
HLDMANSASK FLPSTSLRNS LQFTGDPSLK LLQPNFGFKH HHPQDHQEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1878132155Putative transcription factor PCF6
5zkt_B5e-1878132155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939189.10.0transcription factor TCP13 isoform X1
TrEMBLA0A2H3XZZ90.0A0A2H3XZZ9_PHODC; transcription factor TCP13-like
STRINGXP_008791353.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5