PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939132.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22384.6 Da PI: 7.6037 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.4 | 7.3e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C++lr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++l+++ XP_010939132.1 2 SCNGCRILRKGCSEACILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTINPVNGAVGLLWSGNWHLCCA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_010939132.1 97 AVETVLR 103 *998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.316 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-26 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSCNGCRILR KGCSEACILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60 PALFQSLLFE ACGRTINPVN GAVGLLWSGN WHLCCAAVET VLRGGTLLPL SDLDDAAADH 120 GSASAEGGLY ARPRAAGWSI AAKQRKTAPA NDMQAPPCDL ELCLTPRSLA AAREERRLRP 180 ETPSMTSEGS VTTSGESGGD RLPRLLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939132.1 | 1e-152 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 2e-71 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2H3YMC1 | 1e-125 | A0A2H3YMC1_PHODC; LOB domain-containing protein 38-like | ||||
STRING | XP_008800648.1 | 1e-126 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-67 | LOB domain-containing protein 39 |