PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939130.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 456aa    MW: 50129.4 Da    PI: 5.7429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939130.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.55e-93584532373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl..fsevsPi 90 
                     ++lL++cA+a++++d++laq+lL+ l+++a pdgd++qRl+a  + AL +r +r  ++ +k l++ +++ +     ++++++a+ l  f++++P+
  XP_010939130.1  58 EQLLVHCANAIEANDATLAQQLLWVLHNIAPPDGDSNQRLTAACLHALLTRASR--TGSCKMLAVAAARADAdlslHTHRFSAVDLasFVDLTPW 150
                     79****************************************************..44444443333333223456777777777799******* PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefn 179
                     ++f++ +aN aI eaveg   vHi+D++ ++++Q p+L++ La Rpegpp lR+T  ++ ++          ++ e+g rL +fA++ +v +ef+
  XP_010939130.1 151 HRFGYSAANAAIAEAVEGFPVVHIVDLSTTHCMQIPTLIDLLAGRPEGPPILRLTIPSPTTTAampppiLGLSYDELGARLVNFARSRNVVMEFR 245
                     *******************************************************8888766699998888999********************* PP

            GRAS 180 vl...vakrledleleeLrvkp....gEalaVnlvlqlhrll..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                     v+    a+++e+l +e+Lrv++    gEal++n++++lh+++           + +s+ s r  +Lk+++sl+P++v++v+++ad ++++ + r+
  XP_010939130.1 246 VIpsnSADAFETL-IEQLRVQQlvseGEALIINCQMMLHYIPdetafaisstMSMASMISLRAMFLKALRSLEPTLVTLVDEDADFTASDVVGRL 339
                     *966544445555.788888888888****************777777755555555666999******************************** PP

            GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                       a++y +  +d++++ lp+ se+r+++E+  ++++i+nv+a+eg er+er e++++W +r+++aGF+ v ++e+aa ++k++l +++  g+ ++
  XP_010939130.1 340 RAAFNYLWIPYDAVDTFLPKGSEQRQWYEAG-VRWKIENVIAHEGWERVERPESKGRWAQRMRAAGFRGVGFGEEAAGEVKAMLGEHS-AGWGMK 432
                     *******************************.9******************************************************9.889999 PP

            GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                      e++ lvl+Wk++++v++++W
  XP_010939130.1 433 REEEDLVLTWKGHNVVFATSW 453
                     99999**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.51531435IPR005202Transcription factor GRAS
PfamPF035141.7E-9058453IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MMQFTESAPP PSSLYLNDPP LCLDLTAPRA PLHRPRPWPG FPTSAKSLGS FNTTGCMEQL  60
LVHCANAIEA NDATLAQQLL WVLHNIAPPD GDSNQRLTAA CLHALLTRAS RTGSCKMLAV  120
AAARADADLS LHTHRFSAVD LASFVDLTPW HRFGYSAANA AIAEAVEGFP VVHIVDLSTT  180
HCMQIPTLID LLAGRPEGPP ILRLTIPSPT TTAAMPPPIL GLSYDELGAR LVNFARSRNV  240
VMEFRVIPSN SADAFETLIE QLRVQQLVSE GEALIINCQM MLHYIPDETA FAISSTMSMA  300
SMISLRAMFL KALRSLEPTL VTLVDEDADF TASDVVGRLR AAFNYLWIPY DAVDTFLPKG  360
SEQRQWYEAG VRWKIENVIA HEGWERVERP ESKGRWAQRM RAAGFRGVGF GEEAAGEVKA  420
MLGEHSAGWG MKREEEDLVL TWKGHNVVFA TSWVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-5284561421Protein SHORT-ROOT
5b3h_E2e-5284561421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939130.10.0scarecrow-like protein 32
SwissprotQ9SN221e-160SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A3Q0HT320.0A0A3Q0HT32_PHODC; scarecrow-like protein 32
STRINGXP_008775518.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-141GRAS family protein