PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939060.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 551aa    MW: 59126.2 Da    PI: 7.4749
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939060.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.5e-32252308259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgse+prsYYrCt+++Cpvkkkve+s   ++++ei+Y+g+Hnh+
  XP_010939060.1 252 DDGYNWRKYGQKMVKGSEYPRSYYRCTHPNCPVKKKVEHSL-GGQITEIIYKGQHNHQ 308
                     8****************************************.***************8 PP
2WRKY105.13.7e-33432490159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+ +dp +v++tYeg+Hnh+
  XP_010939060.1 432 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERAPTDPMAVITTYEGKHNHD 490
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-29245310IPR003657WRKY domain
SuperFamilySSF1182907.85E-26249310IPR003657WRKY domain
SMARTSM007742.0E-36251309IPR003657WRKY domain
PROSITE profilePS5081122.584252310IPR003657WRKY domain
PfamPF031061.3E-24252308IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-36418492IPR003657WRKY domain
SuperFamilySSF1182902.48E-29424492IPR003657WRKY domain
PROSITE profilePS5081137.264427492IPR003657WRKY domain
SMARTSM007744.2E-39432491IPR003657WRKY domain
PfamPF031066.9E-26433490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MAENHGGGGR EAAAPRAGPP PRPTISLPPR SAYESLFHGG AAGGGGPSGV SPGPLTLVSS  60
FFAEDPDSGF QSFTQLLQGA MNSPVGAAPP RRPIGQEEKE AERASGGGME RKEEGGLGRQ  120
NRPSSLEITQ PLQIFTVPPG LSPTSLLGSP ALFSPGLGNF GMSHQQALAQ VTAQAAQFQF  180
KMLSQAEYPA CLSAATATSL AQDTGSAINM TPTQEMSTLT SNTDNNTFKS AEGPHADRRS  240
QPTAVTVDKP SDDGYNWRKY GQKMVKGSEY PRSYYRCTHP NCPVKKKVEH SLGGQITEII  300
YKGQHNHQRP QPNKHAKEGG TLSSGRNEFN GNPGIPANSE PGSQVYPGNF SRSNETMPAP  360
SASKGDQEPR YGTPEQLSGA SDSEEVGNVE LRTDEGGDDE PDSKRRNIST SSQKTVAEPR  420
IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP HPRSYYKCTY AGCNVRKHIE RAPTDPMAVI  480
TTYEGKHNHD VPAARNSSHN IASAGVASHG LQPKGQNTIS NNQTSIKITD YRSNDQRPVA  540
VLELKEEHEI T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-39252493878Probable WRKY transcription factor 4
2lex_A3e-39252493878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939060.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-146WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2H3XX580.0A0A2H3XX58_PHODC; probable WRKY transcription factor 4 isoform X1
STRINGXP_008790093.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-126WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]