PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939028.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 419aa    MW: 46394.8 Da    PI: 4.4655
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939028.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.13.1e-181812510128
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104
                     tdeelv  +   +  g++++  +vi+ev  ++vePw+ p       + wy + + d ++ +g+ + ++t++gyWk  g  +  +s  + +vg k+
  XP_010939028.1  18 TDEELV-LFVGGRKFGDPVPD-NVITEVSPFSVEPWNSP-------DMWYLYNPDDPQSLNGECEIKVTRTGYWKPMGGLRIFTS--TPTVGRKT 101
                     899999.66777777778777.89*************99.......57******************************9776665..889***** PP

             NAM 105 tLvfykgrapkgektdWvmheyrl 128
                     t  fy g+ap+g kt W+mhey+ 
  XP_010939028.1 102 TREFYIGKAPNGDKTGWTMHEYQT 125
                     **********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.0859148IPR003441NAC domain
PfamPF023656.5E-917124IPR003441NAC domain
SuperFamilySSF1019418.76E-2717148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MCPSAPFSVP LDINASSTDE ELVLFVGGRK FGDPVPDNVI TEVSPFSVEP WNSPDMWYLY  60
NPDDPQSLNG ECEIKVTRTG YWKPMGGLRI FTSTPTVGRK TTREFYIGKA PNGDKTGWTM  120
HEYQTEQKTH QGINKEQDHC SLYRVFFQIN ERPNHEEQHN SMIADAADGD YLEHVLLNLL  180
EQENNSSSSG AGNRSQMVGR DQQGQSVLSG TSVTGPETDS SAEDVYATCD FSKGDYLELN  240
DLYSPGTSSS SSDNSSLMSV NSDEYFDADA LLRDLENEHN PRVEEEHADC RYSVSASVKS  300
NQVVIRPPPS DAYVAQPFEL PNILGLVIQQ ILFFELKTCH SLIALNAQFA VTVAVIWWQK  360
GAHLPIQCLK GHGLPALPLL LMSYLITGRL LVQANLQVVI QTNLLPVVHV AAGLPEVRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-16314611163NO APICAL MERISTEM PROTEIN
1ut4_B3e-16314611163NO APICAL MERISTEM PROTEIN
1ut7_A3e-16314611163NO APICAL MERISTEM PROTEIN
1ut7_B3e-16314611163NO APICAL MERISTEM PROTEIN
3swm_A3e-16314614166NAC domain-containing protein 19
3swm_B3e-16314614166NAC domain-containing protein 19
3swm_C3e-16314614166NAC domain-containing protein 19
3swm_D3e-16314614166NAC domain-containing protein 19
3swp_A3e-16314614166NAC domain-containing protein 19
3swp_B3e-16314614166NAC domain-containing protein 19
3swp_C3e-16314614166NAC domain-containing protein 19
3swp_D3e-16314614166NAC domain-containing protein 19
4dul_A3e-16314611163NAC domain-containing protein 19
4dul_B3e-16314611163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939028.10.0NAC domain-containing protein 35 isoform X2
TrEMBLA0A2H3YZD10.0A0A2H3YZD1_PHODC; NAC transcription factor 25-like isoform X2
TrEMBLA0A3Q0IDV70.0A0A3Q0IDV7_PHODC; NAC domain-containing protein 35-like isoform X4
STRINGXP_008806190.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-22NAC domain containing protein 28