PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938938.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TALE

Protein Properties

Length: 747aa MW: 81287.6 Da PI: 7.8159

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938938.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2e-09	538	575	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_010938938.1 538 FEHflHPYPSDADKHLLARQTGLSRSQVSNWFINARVR 575 664459******************************88 PP
2	BELL	121.9	2.7e-39	399	469	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q+kkakL+s+l+eVd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia q+ XP_010938938.1 399 RFEHQRKKAKLISMLDEVDRRYNHYCDQMQMVVNCFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIAAQL 469 779*****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.8E-69	322	467	IPR006563	POX domain
Pfam	PF07526	8.5E-51	327	466	IPR006563	POX domain
PROSITE profile	PS50071	12.568	516	579	IPR001356	Homeobox domain
CDD	cd00086	2.00E-13	519	580	No hit	No description
SMART	SM00389	5.8E-10	519	583	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.35E-17	521	586	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-29	522	585	IPR009057	Homeodomain-like
Pfam	PF05920	2.6E-18	536	575	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MGIATPPSPQ PARPYLSPPK PVSRPPYRPN LPTSMSQGYH HGVFSFSYGF DRSASQEQQD 60 PIAQQSRRDK LRVQGLDPGG HPLVPTEEEG EDSGIYESAT TTAATAQANN MLSEIFSFPT 120 MPATPTSDLL SSQISTSYRQ PQRLGMMAGF SGDWYSANRQ GVVLGGTNLS SFGDSTEKHH 180 HGGSQQHHPM FGLNADSTAA MQLFLMNSTL PPLLQQHHHQ RSPSPSPPAP PPTLRRHHHQ 240 AFQSFGDASF SGGVVESQGL SLSLSSSLQQ FEMPKVEELR VQDGVLYNFN NQAQQQQDHH 300 HLSLHLQGHG HGQPVRMGYG TTAVVNVLRN SKYARAVREL LEEFCSVVRG QLKGSRIGMN 360 RGSSSNPNPS HGVGGGASSS VAGASSSSKD LPPLCPADRF EHQRKKAKLI SMLDEVDRRY 420 NHYCDQMQMV VNCFDSVMGF GAATPYTALA QKAMSRHFRC LKDAIAAQLK QTCELLGEKE 480 AGSSSGLTKA ETPRLRLVDP SLRQQKAFQQ MGMMEQEAWR PQRGLPERSV NILRAWLFEH 540 FLHPYPSDAD KHLLARQTGL SRSQVSNWFI NARVRLWKPM VEEMYQQEAK EEVGERERNE 600 ASHHQGALSP TLQQPQGQRL GTGAPSESDP YPAAPPASQH HHHLFATSSS NENPPPAVAH 660 SSNGGAGGGD DTLLVRIVAP EFCGSDVQVG PTDDMYRNGT SSAATLGPAA PMRFGTAGDV 720 SLTLGLRHVG GNASEKGRFS AKDFGGC

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MGIATPPSPQ PARPYLSPPK PVSRPPYRPN LPTSMSQGYH HGVFSFSYGF DRSASQEQQD  60
PIAQQSRRDK LRVQGLDPGG HPLVPTEEEG EDSGIYESAT TTAATAQANN MLSEIFSFPT  120
MPATPTSDLL SSQISTSYRQ PQRLGMMAGF SGDWYSANRQ GVVLGGTNLS SFGDSTEKHH  180
HGGSQQHHPM FGLNADSTAA MQLFLMNSTL PPLLQQHHHQ RSPSPSPPAP PPTLRRHHHQ  240
AFQSFGDASF SGGVVESQGL SLSLSSSLQQ FEMPKVEELR VQDGVLYNFN NQAQQQQDHH  300
HLSLHLQGHG HGQPVRMGYG TTAVVNVLRN SKYARAVREL LEEFCSVVRG QLKGSRIGMN  360
RGSSSNPNPS HGVGGGASSS VAGASSSSKD LPPLCPADRF EHQRKKAKLI SMLDEVDRRY  420
NHYCDQMQMV VNCFDSVMGF GAATPYTALA QKAMSRHFRC LKDAIAAQLK QTCELLGEKE  480
AGSSSGLTKA ETPRLRLVDP SLRQQKAFQQ MGMMEQEAWR PQRGLPERSV NILRAWLFEH  540
FLHPYPSDAD KHLLARQTGL SRSQVSNWFI NARVRLWKPM VEEMYQQEAK EEVGERERNE  600
ASHHQGALSP TLQQPQGQRL GTGAPSESDP YPAAPPASQH HHHLFATSSS NENPPPAVAH  660
SSNGGAGGGD DTLLVRIVAP EFCGSDVQVG PTDDMYRNGT SSAATLGPAA PMRFGTAGDV  720
SLTLGLRHVG GNASEKGRFS AKDFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	2e-16	525	583	5	63	Homeobox protein Meis2
4xrm_B	2e-16	525	583	5	63	Homeobox protein Meis2
4xrs_A	1e-16	525	582	1	58	Homeobox protein Meis1
4xrs_B	1e-16	525	582	1	58	Homeobox protein Meis1
5bng_A	2e-16	525	583	1	59	Homeobox protein Meis2
5bng_B	2e-16	525	583	1	59	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019710527.1	0.0	LOW QUALITY PROTEIN: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-137	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A2H3ZGQ4	0.0	A0A2H3ZGQ4_PHODC; BEL1-like homeodomain protein 4
STRING	XP_008778978.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4433	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	1e-132	BEL1-like homeodomain 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]